Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1979
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66499-7|CAA91298.2|  407|Caenorhabditis elegans Hypothetical pr...    38   0.006
U53154-11|AAC25848.1|  390|Caenorhabditis elegans Hypothetical p...    33   0.24 
AC024772-2|AAF60537.2|  756|Caenorhabditis elegans Osm-9 and cap...    30   1.7  
Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z70750-10|CAA94746.1|  439|Caenorhabditis elegans Hypothetical p...    29   3.0  
L15314-3|AAF99986.2|  393|Caenorhabditis elegans Gtp exchange fa...    28   6.9  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    27   9.2  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    27   9.2  

>Z66499-7|CAA91298.2|  407|Caenorhabditis elegans Hypothetical
           protein T01B7.5a protein.
          Length = 407

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
 Frame = +3

Query: 267 YSENEKRLLDKVRKRKHESDSEEEMYAFXXXXXXXXQKDDLGIA-----DSDVEGQEKSD 431
           Y +    L+D++    H  D + E  A          ++ L +       S+ +G +  D
Sbjct: 14  YEDENDDLIDEINTF-HNKDRKVEKGAIHKRKTFNRPEEVLNVEAEASDSSEDDGSDFDD 72

Query: 432 DDLPD--SKAWGKNKQSYYATDYVDKD 506
           DD+ D     WGK ++ +Y T +VDKD
Sbjct: 73  DDVNDITDNKWGKKRKDFYGTGFVDKD 99


>U53154-11|AAC25848.1|  390|Caenorhabditis elegans Hypothetical
           protein C33G8.2 protein.
          Length = 390

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 24/83 (28%), Positives = 35/83 (42%)
 Frame = +3

Query: 258 EDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXXXXXXXQKDDLGIADSDVEGQEKSDDD 437
           ED   E E++   K  K+K E D EEE            + DD    D   + ++K DD+
Sbjct: 134 EDKKKEEEEKDKKKKDKKKEEDDEEEEQ---KDKKKKDEKNDDDDEEDKKKDKKKKKDDN 190

Query: 438 LPDSKAWGKNKQSYYATDYVDKD 506
             + K   K K+     D  D+D
Sbjct: 191 DEEEKEKDKKKKDKKKDDDDDED 213


>AC024772-2|AAF60537.2|  756|Caenorhabditis elegans Osm-9 and
           capsaicin receptor-relatedprotein 4 protein.
          Length = 756

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
 Frame = -2

Query: 510 PNLCQHNQWHSMIVYFCPKLLNQVSHRLIFPVLQHHCLLFPNHPFDLIPRQNQRKHTFPL 331
           P+L +    H  I Y    L  Q+S   I+ +    C L    PF+   RQ    +    
Sbjct: 364 PHLLEQLVHHKWIAYGRKTLFAQLSMFCIYFICVTSCFLLRPSPFE---RQQHIANDLIC 420

Query: 330 HY--QTHVFSYVLYPIIAFHFQNNHLLI*RGIILFLVKS*IYSYFISHHVDII 178
            Y  +T  F+      I +H    HL+   G  L+LV++ ++   + +H+ ++
Sbjct: 421 FYDFKTRRFNESAVSTIIYHLL--HLICVTGATLYLVQALLHIKNVGYHLYVL 471


>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +3

Query: 228 PKRELCPFRSEDGYSENEKRLLDKVRKRKHESDSEEE 338
           PKR    F   D Y+++EKR L++ R R ++S+  EE
Sbjct: 559 PKRS-SKFDFNDAYNDDEKRGLEEHRPRGYDSERAEE 594


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
 Frame = +3

Query: 273  ENEKRLLDKVRKRKHESDSEE-----EMYAFXXXXXXXXQKDDLGIADSDV-EGQEKSDD 434
            +N++ L D  +  +   DSEE     E            Q D+  +AD  + E +EK D 
Sbjct: 3846 QNDQELEDPTQTNEENEDSEEQKKEDEALEQGTGGEKNDQDDNKDVADGGLAEEEEKEDQ 3905

Query: 435  DLPDSKAWGKNK 470
            +  D K  GK+K
Sbjct: 3906 EDQDEKGEGKSK 3917


>Z70750-10|CAA94746.1|  439|Caenorhabditis elegans Hypothetical
           protein C50F4.12 protein.
          Length = 439

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 352 LILTRNQIKRMIWE*QTVMLKDRKNQTMTYLIQKLGAKINNHTM 483
           L  T NQ+K ++ E   + + D K  + TY   +   KINN T+
Sbjct: 306 LNFTTNQLKMLVMEDPRIFMMDSKLVSKTYKYVRDVMKINNETI 349


>L15314-3|AAF99986.2|  393|Caenorhabditis elegans Gtp exchange
           factor for arfs protein1 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 249 FRSEDGYSENEKRLLDKVRKRKHESDSEEE 338
           +   +G SE EK  L KVRKRK +   E E
Sbjct: 5   YSERNGLSETEKMTLPKVRKRKAQLVDEIE 34


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
 Frame = +3

Query: 252   RSEDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXXXXXXXQKDDLGIADSDVEGQEKSD 431
             + +DG  +++ +   K+ K+K E+   E++ A         + D   +A+++V  ++K D
Sbjct: 12558 KKDDGDDKSKPKTKKKIIKKK-ETPESEQVTAAEPEQQKISEVDVQSVAETEVGAKKKPD 12616

Query: 432   ----DDLPDSKAWGKNKQS 476
                  DL  +K   K+K+S
Sbjct: 12617 AEKPTDLSKAKKDSKSKKS 12635


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
 Frame = +3

Query: 252   RSEDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXXXXXXXQKDDLGIADSDVEGQEKSD 431
             + +DG  +++ +   K+ K+K E+   E++ A         + D   +A+++V  ++K D
Sbjct: 12558 KKDDGDDKSKPKTKKKIIKKK-ETPESEQVTAAEPEQQKISEVDVQSVAETEVGAKKKPD 12616

Query: 432   ----DDLPDSKAWGKNKQS 476
                  DL  +K   K+K+S
Sbjct: 12617 AEKPTDLSKAKKDSKSKKS 12635


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,191,813
Number of Sequences: 27780
Number of extensions: 225157
Number of successful extensions: 871
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)