Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1975
(775 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 29 0.74
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 29 0.98
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo... 28 1.3
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 28 1.3
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 28 1.3
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c... 27 3.9
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 26 5.2
SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual 26 6.9
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 9.1
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 9.1
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 29.1 bits (62), Expect = 0.74
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +2
Query: 533 ALQLLPSIKVWSDWMLCHSSVWNPPPSFTNFNVELESDSWDWLAKLM 673
AL++ +++W ++CH S+ + ELE+D +D+L + +
Sbjct: 452 ALEIFERLQMWDCVVMCHCSLNRQDLAVQVIKRELENDPYDFLLRTL 498
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 28.7 bits (61), Expect = 0.98
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +3
Query: 258 TFHESAGLMLRQFRTLLHRQPLPMPAARLLQLTALNMFAVETTGSTYKGCSGA 416
+++ SAG +L ++RTLL P+ ++ L A N F GS Y S A
Sbjct: 726 SYYRSAGRLLMRYRTLLASFPVV-----VISLAAYNQFRYFHYGSAYLSMSAA 773
>SPBC336.14c |ppk26||serine/threonine protein kinase
Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 589
Score = 28.3 bits (60), Expect = 1.3
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Frame = +3
Query: 252 NETFHESAGLML---RQFRTLLHR----QPLPMPAARLLQLTALNMFAVETTGSTYKGCS 410
NE FH+ +G+ QF+ L+ QP PMP + T +F +TT + S
Sbjct: 141 NEPFHDDSGVYYTRQNQFKPTLYNLYNPQPSPMPTLLPYERTVNGLFIDDTTRERIERKS 200
Query: 411 GAER 422
A R
Sbjct: 201 EASR 204
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 626 NVELESDSWDWLAKLMNILEILDDKTIKLEN 718
N+ LE +S +W + + ILD+K K+EN
Sbjct: 393 NISLEPNSTEWDDDVSALQSILDNKVSKIEN 423
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 479 GKMLCVIAGTTHTQHHADALQLLPSIKVWSDWMLCHSSVWNPPPSFTN 622
GK+ CV G + + H D ++ +P D+ L + +W+ P N
Sbjct: 351 GKIFCVHGGLSPSLSHMDDIREIPRPTDVPDYGLLNDLLWSDPADTEN 398
>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -3
Query: 350 LKESSGRHRQGLSVQQRAELPQHEA 276
+K+S G H+ +++++ E P H+A
Sbjct: 304 VKDSQGSHQTKVTIEENMEAPSHQA 328
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 26.2 bits (55), Expect = 5.2
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 169 STMTSVELNKSFITSYLHVHGKLITKIG-MKPFTKVPASCCGSSARCCTDSPCRCRPLDS 345
ST++ VE++ + S + + G+L K+G + F + A SS+ +DS CRP S
Sbjct: 426 STVSRVEVSTDEVASAISLVGRLRRKLGKLFRFRRPKARVFDSSSSVPSDSSI-CRPESS 484
>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 296
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +1
Query: 157 DEQLSTMTSVELNKSFITSYLHVHGKLITKIGMKPFTKV 273
D + + + +L K F+ Y H+HG + I + P+T++
Sbjct: 76 DVSVPEVFAAKLAKHFVDKYKHIHGAAL-DITITPWTRM 113
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 536 LQLLPSIKVWSDWMLCHSSVWNPPPSFTNFNVELESDSWDWLAKLMN 676
LQL+ + + S + +S W+P S +FN++L + S+ L +N
Sbjct: 292 LQLIQCLAI-SYPLWSNSETWDPHRSIRSFNLDLLNSSFFSLKNFLN 337
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.4 bits (53), Expect = 9.1
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Frame = +2
Query: 509 THTQHHADALQLLPSIKVWSDWMLCHSSVWNPPPSFTNFNVEL--ESDSWDWL---AKLM 673
+H + AD LQ++ ++ +W P +F N +E+ + DS D + +L+
Sbjct: 340 SHVCYFADYLQIIVCDEILKNWSPGLEKPAKPEVNFNNLPLEIVNDDDSEDDIYAAEELL 399
Query: 674 NILEILDDKT 703
+++ L D+T
Sbjct: 400 DVIANLQDET 409
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,515
Number of Sequences: 5004
Number of extensions: 54564
Number of successful extensions: 166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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