Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1975
         (775 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi...    31   1.2  
Z37139-4|CAA85488.1|  231|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U41268-5|AAA82438.1|  349|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    29   3.7  
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi...    29   4.9  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    29   4.9  
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr...    28   8.5  
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr...    28   8.5  
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p...    28   8.5  
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p...    28   8.5  
U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,...    28   8.5  

>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
           nonsense-mediated mRNA decay trans-acting factor
           protein.
          Length = 1069

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 127 VTATXRQPVIDEQLSTMTSVELNKSFITSYLHVHGKLITKI 249
           V+   +  V   Q+  +TS E  +SFI +Y+H  G L +K+
Sbjct: 751 VSKLIKAGVQPHQIGVITSYEGQRSFIVNYMHTQGTLNSKL 791


>Z37139-4|CAA85488.1|  231|Caenorhabditis elegans Hypothetical
           protein C14B1.8 protein.
          Length = 231

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 666 FANQSHESLSSSTLKLVKEGGGF 598
           F+NQS  S+ +S +K++ EG GF
Sbjct: 189 FSNQSANSILNSAMKIISEGDGF 211


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 564 GPTGCCVTVVSGTHRLPSPIST*NSKAT 647
           GPTG  VTVV G+   P+P S+ N  ++
Sbjct: 306 GPTGSTVTVVPGSSTSPAPSSSPNPSSS 333


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 564 GPTGCCVTVVSGTHRLPSPIST*NSKAT 647
           GPTG  VTVV G+   P+P S+ N  ++
Sbjct: 513 GPTGSTVTVVPGSSTSPAPSSSPNPSSS 540


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 564 GPTGCCVTVVSGTHRLPSPIST*NSKAT 647
           GPTG  VTVV G+   P+P S+ N  ++
Sbjct: 513 GPTGSTVTVVPGSSTSPAPSSSPNPSSS 540


>U41268-5|AAA82438.1|  349|Caenorhabditis elegans Hypothetical
           protein T14G12.6 protein.
          Length = 349

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 481 STSAPNMSKDTPRAHSNQAGLSAPEQPLYVEPVVSTANM 365
           ST AP +S  TP   S  A   APE  +   P + T+ +
Sbjct: 180 STMAPEVSTMTPEGLSTSAETEAPEVTMMTTPAMETSTV 218


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 157  DEQLSTMTSVELNKSFITSYLHVHGKLITKIGMKPFTKV 273
            DE+ + M++++  K    SYL    K++ K+G K  TK+
Sbjct: 3696 DEKCNPMSAMDPRKKKSNSYLKRWAKMMAKVGKKNMTKL 3734


>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 2 protein.
          Length = 1069

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 127 VTATXRQPVIDEQLSTMTSVELNKSFITSYLHVHGKLITKI 249
           V+   +  V   Q+  +T  E  +SFI +Y+H  G L +K+
Sbjct: 751 VSKLIKAGVQPHQIGVITPYEGQRSFIVNYMHTQGTLNSKL 791


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 469  PNMSKDTPRAHSNQAGLSAPEQPLYVEPVVSTA 371
            P   +DTP   S+ +    PE P+ VEP + T+
Sbjct: 1472 PLPGEDTPSRKSSSSSAPLPEAPIVVEPPIITS 1504


>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
           protein F53B7.5b protein.
          Length = 2892

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 481 STSAPNMSKDTPRAHSNQAGLSAPEQPLYVEPVVSTANMLS 359
           STS P+MS + P A S+    S P+  +  E   +++N +S
Sbjct: 564 STSEPSMSSEAPGASSSDFPSSTPDSSVSSEEPNASSNSVS 604


>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
           protein F53B7.5a protein.
          Length = 3095

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 481 STSAPNMSKDTPRAHSNQAGLSAPEQPLYVEPVVSTANMLS 359
           STS P+MS + P A S+    S P+  +  E   +++N +S
Sbjct: 564 STSEPSMSSEAPGASSSDFPSSTPDSSVSSEEPNASSNSVS 604


>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
           protein F53B7.5b protein.
          Length = 2892

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 481 STSAPNMSKDTPRAHSNQAGLSAPEQPLYVEPVVSTANMLS 359
           STS P+MS + P A S+    S P+  +  E   +++N +S
Sbjct: 564 STSEPSMSSEAPGASSSDFPSSTPDSSVSSEEPNASSNSVS 604


>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
           protein F53B7.5a protein.
          Length = 3095

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 481 STSAPNMSKDTPRAHSNQAGLSAPEQPLYVEPVVSTANMLS 359
           STS P+MS + P A S+    S P+  +  E   +++N +S
Sbjct: 564 STSEPSMSSEAPGASSSDFPSSTPDSSVSSEEPNASSNSVS 604


>U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,
            class iii (c) protein1 protein.
          Length = 1400

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
 Frame = +1

Query: 124  DVTATXRQPVIDEQLSTMTSVELNKSFITSYLHVHGKL---ITKIGMKPFTKVP--ASCC 288
            ++  T  QP+  ++L  +   E+ K F   Y+H   KL   IT+  +K   K     + C
Sbjct: 927  NIQTTKEQPIPVDKLDEVLKAEIQKKFKGKYVHFADKLSEYITQTEIKKSKKWQNGKAHC 986

Query: 289  GS--SARCCTDSPCR-CRPLDSF 348
            G+  +A   T   C+ C+ L+++
Sbjct: 987  GNHETADLKTKESCKICKNLEAY 1009


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,189,352
Number of Sequences: 27780
Number of extensions: 326550
Number of successful extensions: 1098
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)