Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1974
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    28   1.6  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   3.6  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    27   3.6  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   8.3  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   8.3  
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    25   8.3  

>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 444 NNGSENNETGPAKRQASLHNDHWLLARQKHVMKYAT 551
           ++G  +N+T P +R   ++ DHW    ++  + Y T
Sbjct: 169 SSGLFSNDTIPEERIVLIYTDHWTGVAERQAIAYTT 204


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -3

Query: 661  MNLRTSPATSCDPFMGHISCHGVHDTESTSNPCSKYNV 548
            M+  TS     DP +G      VH TE+ SN  S YNV
Sbjct: 1608 MSAVTSRPWHEDPQLGIYRFFNVHGTEAFSNSKSLYNV 1645


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -1

Query: 642 RQLAVIPSWATLAATECTTPRARRTPAPSTTSRI 541
           R L+   + +++A T+ TTP++  TP  +TTS +
Sbjct: 488 RPLSQTITESSVAKTKSTTPKSTDTPTEATTSPV 521


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -3

Query: 700 PCTTRGCSFSFEAMNLRTSPATSCDPFMGHISCHGVHDTESTSNP 566
           P T+R   FS   +    SP+T   PF  + S HG+H     S P
Sbjct: 376 PSTSRDYPFSASTI----SPST---PFSAYSSSHGIHQRIPASTP 413


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 312 ALHTNFSIVKCMRNKFSKHTI 250
           ALH NFS+   +RNK  +H +
Sbjct: 247 ALHANFSVSISLRNKAIQHLL 267


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 391 NEAYARSLPSLPERMIAENETAKIFRCSSYQFF 293
           NE++ R LP   +R +A  + AKI     Y  F
Sbjct: 230 NESWDRFLPQFKKRNVARRKPAKIRETKEYTPF 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,228
Number of Sequences: 5004
Number of extensions: 57781
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)