Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1974
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0043 + 25920034-25920274,25921585-25921748                       33   0.31 
06_03_1501 + 30612643-30613310,30613396-30613501,30613732-306139...    32   0.53 
04_04_0549 - 26179668-26181176                                         32   0.53 
02_01_0269 + 1788788-1789508,1789629-1789658,1790127-1790368,179...    31   0.70 
04_04_0059 + 22418795-22418908,22419064-22419202,22419437-224195...    29   2.8  
07_03_1539 + 27567397-27568985,27569153-27569279,27569361-27569837     29   3.8  
04_04_0550 - 26187347-26188828                                         29   5.0  

>01_06_0043 + 25920034-25920274,25921585-25921748
          Length = 134

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = +3

Query: 351 RSGSDGRLRAYASFPGHHEEHSIH*QRESQTNNGSENNETGPAKRQASLHNDHWLLARQK 530
           +SGS   L  Y +   HH+ H    Q  S  NNG+  +   P+    S   + W L RQK
Sbjct: 9   QSGSSVALVFYGTTTIHHQRHLPSSQVPSSRNNGNHGSAASPSNPWPSGDGEKW-LRRQK 67


>06_03_1501 +
           30612643-30613310,30613396-30613501,30613732-30613934,
           30614211-30614502
          Length = 422

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
 Frame = +3

Query: 510 WLLARQKHVMKYATLYLEQGFDVLSVSCTPWQLMWPMKGSQL-----VAGDVLKFMASNE 674
           WL +RQKH+ +YA  Y  +G+  ++ +     ++    G +      +  + L    S E
Sbjct: 147 WLGSRQKHLKRYADWYTSRGYHAVTFTLPMSDIVSYNVGGKAEKNVEMLSEHLADWVSEE 206

Query: 675 NEQPLVVHGFSIAGYM 722
           + + +V H FS  G++
Sbjct: 207 DGKKIVFHTFSNTGWL 222


>04_04_0549 - 26179668-26181176
          Length = 502

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 576 VLSVSCTPWQLMWPMKGSQLVAGDVLKFMASN 671
           V  VSC PW ++W +KG+  + GDV +++  N
Sbjct: 317 VALVSC-PWPVLWVIKGAGSLPGDVKEWLCEN 347


>02_01_0269 +
           1788788-1789508,1789629-1789658,1790127-1790368,
           1790595-1790803,1791924-1792182
          Length = 486

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 510 WLLARQKHVMKYATLYLEQG 569
           WL ARQKH+ +YA LY ++G
Sbjct: 115 WLGARQKHLRRYADLYRDRG 134


>04_04_0059 +
           22418795-22418908,22419064-22419202,22419437-22419525,
           22420428-22420690,22420793-22420883,22420966-22421325
          Length = 351

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +3

Query: 558 LEQGFDVLSVSCTPWQLMWPMKGSQLVAGDVL 653
           LE G D  S  C     +WP +GS ++AGDVL
Sbjct: 53  LEVGDDTRSRFCVS---LWPKRGSSVLAGDVL 81


>07_03_1539 + 27567397-27568985,27569153-27569279,27569361-27569837
          Length = 730

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 648 RHRQLAVIPSWATLAATECTTP 583
           RHR L  +P W  LA  + TTP
Sbjct: 89  RHRPLPAVPGWQLLAVADETTP 110


>04_04_0550 - 26187347-26188828
          Length = 493

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 585 VSCTPWQLMWPMKGSQLVAGDVLKFMASNENEQPLVVHGFS 707
           VSC PW  +W   G+  + GDV  ++  N +    V H  S
Sbjct: 311 VSC-PWPTLWVFNGADTLPGDVRDWLRENTDADG-VAHAHS 349


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,352,945
Number of Sequences: 37544
Number of extensions: 362288
Number of successful extensions: 920
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)