Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1974
(726 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29612-3|AAA68802.2| 289|Caenorhabditis elegans Hypothetical pr... 36 0.029
U58753-6|AAC24440.1| 705|Caenorhabditis elegans Hypothetical pr... 29 2.6
AL031627-11|CAA20962.2| 355|Caenorhabditis elegans Hypothetical... 29 2.6
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 29 3.4
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 28 5.9
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 28 5.9
U80840-10|AAB37926.2| 214|Caenorhabditis elegans Hypothetical p... 28 5.9
L14745-13|AAR25658.1| 210|Caenorhabditis elegans Hypothetical p... 28 7.8
>U29612-3|AAA68802.2| 289|Caenorhabditis elegans Hypothetical
protein C09B8.4 protein.
Length = 289
Score = 35.9 bits (79), Expect = 0.029
Identities = 20/69 (28%), Positives = 36/69 (52%)
Frame = +3
Query: 510 WLLARQKHVMKYATLYLEQGFDVLSVSCTPWQLMWPMKGSQLVAGDVLKFMASNENEQPL 689
W A KH+ KY+ LY ++G+DV ++ C P + + + + G + + P+
Sbjct: 62 WAGAANKHMEKYSKLYNDKGYDV-ALICPP-TFSFTVPNNSI--GKRMLPILEKYGNSPI 117
Query: 690 VVHGFSIAG 716
++H FSI G
Sbjct: 118 MIHSFSING 126
>U58753-6|AAC24440.1| 705|Caenorhabditis elegans Hypothetical
protein W03B1.8 protein.
Length = 705
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 613 HISCHGV-HDTESTSNPCSKYNVAYFITCFC 524
H+S HG+ H + CSK N+A F+ FC
Sbjct: 666 HLSPHGIEHIRHVWKDICSKLNLAAFVLLFC 696
>AL031627-11|CAA20962.2| 355|Caenorhabditis elegans Hypothetical
protein Y102A5C.21 protein.
Length = 355
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = -3
Query: 214 VYSIVQSLI*IVYK*PFVFFLRNDIFLMKLASINQFKCRYGFRILSSLRTISLIDKTYL 38
VY+ V LI +++ PF+FF R D KL ++ + C +S+ I+L DKT +
Sbjct: 152 VYNCV-ILIPVLFALPFLFFFRRDQDAAKLDALKNYPCPTREFFTTSV-FIALTDKTLM 208
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 378 AYASFPGHHEEHSIH*QRESQTNNGSENNETGPAKRQAS 494
A+ + PGHHE H H ++Q ++ S ++ + + +S
Sbjct: 85 AHGAHPGHHEVHHHHHHVKAQDSSSSSSSSSSSSSSSSS 123
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 673 SFEAMNLRTSPATSCDPFMGHISCHGVHDTESTSNPCSKYNVAYF 539
S +++ TSP +S + +G I T ST N CS+ NV F
Sbjct: 599 SSNSVSTETSPGSSDETTIGVIEETTTEYTWSTCNDCSQINVQLF 643
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 673 SFEAMNLRTSPATSCDPFMGHISCHGVHDTESTSNPCSKYNVAYF 539
S +++ TSP +S + +G I T ST N CS+ NV F
Sbjct: 599 SSNSVSTETSPGSSDETTIGVIEETTTEYTWSTCNDCSQINVQLF 643
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 673 SFEAMNLRTSPATSCDPFMGHISCHGVHDTESTSNPCSKYNVAYF 539
S +++ TSP +S + +G I T ST N CS+ NV F
Sbjct: 599 SSNSVSTETSPGSSDETTIGVIEETTTEYTWSTCNDCSQINVQLF 643
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 673 SFEAMNLRTSPATSCDPFMGHISCHGVHDTESTSNPCSKYNVAYF 539
S +++ TSP +S + +G I T ST N CS+ NV F
Sbjct: 599 SSNSVSTETSPGSSDETTIGVIEETTTEYTWSTCNDCSQINVQLF 643
>U80840-10|AAB37926.2| 214|Caenorhabditis elegans Hypothetical
protein F08D12.2 protein.
Length = 214
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 433 KVKLTTDPKTMKLDQQRDRPLCIMITGCWPDRSTL*NTRRCTWSRGSTC 579
K K DP T Q+D+ + + I G P+ ++L C W+ G C
Sbjct: 166 KAKDVYDPSTATC--QKDKDVGLAIKGSCPEGTSLTKGSVCCWNEGVQC 212
>L14745-13|AAR25658.1| 210|Caenorhabditis elegans Hypothetical
protein C02F5.13 protein.
Length = 210
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 610 ISCHGVHDTESTSNPCSKYNVAYFIT 533
I CHG T + S PC YN YF+T
Sbjct: 124 IECHGPR-TFTKSTPCIIYNGHYFLT 148
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,077,855
Number of Sequences: 27780
Number of extensions: 331695
Number of successful extensions: 944
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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