Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1973
         (790 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    23   2.8  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    23   3.7  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   3.7  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   6.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   8.5  
AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    21   8.5  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   8.5  

>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 257 NEYFGWGAEDDDLYSRLRACNF 322
           NE+FGW      LYS L   N+
Sbjct: 209 NEFFGWPIIMIILYSSLMVLNY 230


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 105 SYRQFIIFSLYSTTNYKHFDIYCRFVLPY 191
           +Y   II+S+   T    FD  CR  + Y
Sbjct: 126 AYGVVIIYSICVQTEKSVFDFLCRHTVEY 154


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +2

Query: 194 DPFWWGDIDKN*SIQNGKRNGNEYFGWGAEDDDLYSRLRACNFKI 328
           +PF   D DKN + ++   + NE +    +++ +Y    +C F I
Sbjct: 22  NPFLASDCDKNQNTEHNYTHNNEMY-HSVKEEPIY---ESCRFSI 62


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = -1

Query: 691 IIKGGNVCIWTKK 653
           ++ GG VC+W+++
Sbjct: 504 LVLGGEVCLWSEQ 516


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 668 AHIATFDNRRLIYLILNQRLKMKKKN 745
           AH      R++     N+R+K KK+N
Sbjct: 276 AHALCLTERQIKIWFQNRRMKWKKEN 301


>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like protein
           protein.
          Length = 160

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 665 NAHIATFDNRRLIYLILNQRLK 730
           NA    F  RR IYL + +RLK
Sbjct: 102 NALYQVFVFRRSIYLQIKERLK 123


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 668 AHIATFDNRRLIYLILNQRLKMKKKN 745
           AH      R++     N+R+K KK+N
Sbjct: 278 AHALCLTERQIKIWFQNRRMKWKKEN 303


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,227
Number of Sequences: 336
Number of extensions: 4152
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)