Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1973
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    27   3.1  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    26   5.4  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   7.1  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   7.1  

>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +1

Query: 124 YFRFTVQQTISTSTFIA 174
           Y+ FT  +TIST+TFIA
Sbjct: 347 YYEFTSPRTISTATFIA 363


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 281 QHPNQSTRYHSVYHFVL-TSSYRYHPTKKGQIWKHKS 174
           Q PNQST  HSV   +L +SS   H    G I+ + S
Sbjct: 212 QLPNQSTFRHSVNRDLLGSSSTTSHDRSSGSIYSNDS 248


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +3

Query: 96  SIASYRQFIIFSLYSTTNYKHFDIYCRFVLPYLTLFGGVISIRTSQYKMVN 248
           S+ SY + ++  +++  NY  F +    +LP    F  V   + S+Y+ +N
Sbjct: 209 SLISYVK-VLCGVFNIPNYNAFILSVEDLLPENISFAAVADFQLSKYRAIN 258


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 418 RLYESTSIKAGNVTFGQLLVNQKNELLTLYSLAVTKL 528
           RLY S+ + +  +T+   + N++  L+ LYSL  T L
Sbjct: 283 RLYRSSEVASHTLTYLTCVANKQLILVFLYSLINTTL 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,169,008
Number of Sequences: 5004
Number of extensions: 65791
Number of successful extensions: 174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)