Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1973
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0003 + 30921197-30921388,30921514-30921632,30921742-309218...    28   7.4  
01_07_0061 + 40818077-40818241,40818494-40818716,40819015-408192...    28   7.4  
06_02_0069 - 11126235-11127538,11128361-11128421                       28   9.7  

>03_06_0003 +
           30921197-30921388,30921514-30921632,30921742-30921811,
           30922078-30922161,30922258-30922344,30922431-30922501,
           30922648-30922702,30923374-30923509,30925009-30925103,
           30925203-30925357,30925435-30925543,30925761-30925817,
           30925913-30926027,30926177-30926264,30926738-30927501,
           30927600-30927688,30928315-30928422,30928550-30928657,
           30928887-30928977,30929235-30929287,30929557-30929712,
           30930763-30930825,30931491-30931535,30932075-30932130,
           30933051-30933132,30933238-30933354,30933428-30933530,
           30933912-30934062,30934180-30934417,30934564-30934764,
           30934850-30934935,30935036-30935135
          Length = 1347

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 341 VQTCKF*NYKLEGGCINHHPQHP-NQSTRYHSVYHFVLTSSY 219
           +Q  +F +Y  +   ++ HPQ P N   + +S+Y F  TS Y
Sbjct: 224 IQVWRFNSYPFKNIVVSGHPQRPTNPFKQDNSIYLFSTTSVY 265


>01_07_0061 +
           40818077-40818241,40818494-40818716,40819015-40819263,
           40819455-40819505,40819611-40819871,40819994-40820046,
           40820234-40820348,40820475-40820696,40821280-40822253
          Length = 770

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 463 GQLLVNQKNELLTLYSLAVTKLFGTTS*INNRLSINLYLMQVLNRIL 603
           GQ+ + + N +L +  +AVT +F TT  I N   I +  +  +  +L
Sbjct: 414 GQVYIPEINYVLMVLCVAVTAIFQTTDKIGNAYGIAVVFVMFITTLL 460


>06_02_0069 - 11126235-11127538,11128361-11128421
          Length = 454

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 665 NAHIATFDNRRLIYLILNQRL-KMKKKN 745
           N H+  +D R   Y++LN +  K+KKKN
Sbjct: 217 NDHLVHYDGRNDKYMVLNHKAKKLKKKN 244


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,481,944
Number of Sequences: 37544
Number of extensions: 351770
Number of successful extensions: 703
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)