Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1973
(790 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY533306-1|AAS21308.1| 383|Caenorhabditis elegans BRE-4 protein. 46 3e-05
AY130767-1|AAM95168.1| 383|Caenorhabditis elegans UDPGalNAc:Glc... 46 3e-05
AC025727-7|AAG23384.1| 383|Caenorhabditis elegans Bt (bacillus ... 46 3e-05
Z66521-7|CAA91401.2| 387|Caenorhabditis elegans Hypothetical pr... 44 2e-04
X98132-1|CAA66831.1| 387|Caenorhabditis elegans N-acetyllactosa... 44 2e-04
Z29095-5|CAA82350.1| 289|Caenorhabditis elegans Hypothetical pr... 33 0.31
AJ005867-1|CAA06744.1| 289|Caenorhabditis elegans Sqv-3 protein... 33 0.31
Z49132-10|CAE18050.1| 163|Caenorhabditis elegans Hypothetical p... 30 2.2
Z81513-7|CAB04179.1| 319|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical pr... 28 6.6
>AY533306-1|AAS21308.1| 383|Caenorhabditis elegans BRE-4 protein.
Length = 383
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +2
Query: 245 KRNG--NEYFGWGAEDDDLYSRLRACNFKICRFGPEISQYHMFSHKLQ 382
K NG N+++GWG EDDDL +R K+ R+ +I++Y M H +
Sbjct: 271 KINGFSNDFWGWGGEDDDLATRTSMAGLKVSRYPTQIARYKMIKHSTE 318
>AY130767-1|AAM95168.1| 383|Caenorhabditis elegans
UDPGalNAc:GlcNAc{beta}-R
{beta}1,4-N-acetylgalactosaminyltransferase protein.
Length = 383
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +2
Query: 245 KRNG--NEYFGWGAEDDDLYSRLRACNFKICRFGPEISQYHMFSHKLQ 382
K NG N+++GWG EDDDL +R K+ R+ +I++Y M H +
Sbjct: 271 KINGFSNDFWGWGGEDDDLATRTSMAGLKVSRYPTQIARYKMIKHSTE 318
>AC025727-7|AAG23384.1| 383|Caenorhabditis elegans Bt (bacillus
thuringiensis) toxinresistant protein 4 protein.
Length = 383
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +2
Query: 245 KRNG--NEYFGWGAEDDDLYSRLRACNFKICRFGPEISQYHMFSHKLQ 382
K NG N+++GWG EDDDL +R K+ R+ +I++Y M H +
Sbjct: 271 KINGFSNDFWGWGGEDDDLATRTSMAGLKVSRYPTQIARYKMIKHSTE 318
>Z66521-7|CAA91401.2| 387|Caenorhabditis elegans Hypothetical
protein W02B12.11 protein.
Length = 387
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +2
Query: 257 NEYFGWGAEDDDLYSRLRACNFKICRFGPEISQYHMFSHKLQRKG*VP 400
N+++ WG EDDD+ R+ + N+ I R PE +Y M H ++RK P
Sbjct: 287 NQFWAWGGEDDDMGQRILSLNYTIERPNPETGRYSMLKH-VKRKRTAP 333
>X98132-1|CAA66831.1| 387|Caenorhabditis elegans
N-acetyllactosamine synthase protein.
Length = 387
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +2
Query: 257 NEYFGWGAEDDDLYSRLRACNFKICRFGPEISQYHMFSHKLQRKG*VP 400
N+++ WG EDDD+ R+ + N+ I R PE +Y M H ++RK P
Sbjct: 287 NQFWAWGGEDDDMGQRILSLNYTIERPNPETGRYSMLKH-VKRKRTAP 333
>Z29095-5|CAA82350.1| 289|Caenorhabditis elegans Hypothetical
protein R10E11.4 protein.
Length = 289
Score = 32.7 bits (71), Expect = 0.31
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 245 KRNG--NEYFGWGAEDDDLYSRLRACNFKICRF-GPEISQYHMFSH 373
K NG N+Y+GWG EDD+ Y R+ + R G + F H
Sbjct: 173 KLNGMSNKYWGWGLEDDEFYLRIIDSKLNLTRVSGLSTDSSNTFRH 218
>AJ005867-1|CAA06744.1| 289|Caenorhabditis elegans Sqv-3 protein
protein.
Length = 289
Score = 32.7 bits (71), Expect = 0.31
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 245 KRNG--NEYFGWGAEDDDLYSRLRACNFKICRF-GPEISQYHMFSH 373
K NG N+Y+GWG EDD+ Y R+ + R G + F H
Sbjct: 173 KLNGMSNKYWGWGLEDDEFYLRIIDSKLNLTRVSGLSTDSSNTFRH 218
>Z49132-10|CAE18050.1| 163|Caenorhabditis elegans Hypothetical
protein ZK666.12 protein.
Length = 163
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 108 YRQFIIFSLYSTTNYKHFDIYCRFVLPYLTLFGGVISIRTSQYKMVNGMV 257
Y ++I S +Y F ++C F+LP ++ +TS KM MV
Sbjct: 110 YAKYICEKYESPLSYSLFSLFCLFLLPAYYRCFLLLKFKTSHRKMFKSMV 159
>Z81513-7|CAB04179.1| 319|Caenorhabditis elegans Hypothetical
protein F26D2.9 protein.
Length = 319
Score = 28.7 bits (61), Expect = 5.0
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Frame = +3
Query: 168 YCRFVLPYLTLFGGVISIRTSQYKMV-NGMVTSTLVGVLR---MMIYTAAFELVILKFAG 335
Y RFV+ + LFG + + K + N VT L+G+ + ++ F L + +
Sbjct: 44 YARFVIAFFGLFGSIFHLTVLTQKPIRNSSVTIFLIGIATCDLVRMFETIFSLGKMYYKQ 103
Query: 336 LDLRLVSTICL-ATSYKGKGKFHIHN*I*II*VD 434
L +S C+ SY F + N + +I VD
Sbjct: 104 LLFLHISQTCVPPLSYIDMTIFVVLNALDMISVD 137
>Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical protein
C34F6.9 protein.
Length = 1181
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -2
Query: 654 NVIDMSIQIDLNIMSPSKNTVQNLH*IKVNT*PVIYLRCRS 532
N D +I + +++ S +K T+Q++ N PV+ + C+S
Sbjct: 996 NAPDKAIYVSIDLSSKTKGTMQSMVDKMANPIPVVGMNCKS 1036
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,223,576
Number of Sequences: 27780
Number of extensions: 354145
Number of successful extensions: 933
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -