Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1973
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    23   4.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   7.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.9  

>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 668 AHIATFDNRRLIYLILNQRLKMKKKNYR 751
           AH      R++     N+R+K KK+N R
Sbjct: 42  AHALCLTERQIKIWFQNRRMKWKKENAR 69


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 278 HPNQSTRYHSV-YHFVLTSSYRYHPTKKGQIW 186
           +PN S  Y+ V Y   LTS YR    K G++W
Sbjct: 106 YPNWS--YNDVKYCDGLTSVYRMQVDKCGRLW 135


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = +3

Query: 180 VLPYLTLFGGVISI-----RTSQYKMVNGMVTSTLVGVLRMMIYTAAFELVIL 323
           ++P LTLFG V+ I       +   + N  + S  V  L + +    F + +L
Sbjct: 195 IVPCLTLFGNVLVILAVVRERALQTVTNYFIVSLAVADLLVAVLVMPFAVYVL 247


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 668 AHIATFDNRRLIYLILNQRLKMKKKN 745
           AH      R++     N+R+K KK+N
Sbjct: 304 AHALCLTERQIKIWFQNRRMKWKKEN 329


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 351 LISGPNLQILKLQARRRLYKSSSSAPQPK 265
           L+ GP+++I   + R +L +S    P P+
Sbjct: 189 LLIGPSIRITPAKKRIKLEQSPLCPPAPR 217


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,351
Number of Sequences: 438
Number of extensions: 4621
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)