Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1970
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    29   0.57 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.3  
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy...    25   9.4  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    25   9.4  

>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = +3

Query: 264 IESKEPAPPRDLSQLESHKALSSHPSYLAYSSTIFPGRRRTS*LYSPTTRMFT 422
           + +  PAPP   +        SS PS    +S  FP     S L+SPT R  T
Sbjct: 233 LSTSTPAPPNS-NNANPSTLFSSIPSSRHTTSNHFPSNSAQSSLFSPTARPLT 284


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +2

Query: 380  SNQLALFADDTNVY 421
            SNQ+ LF DDTNVY
Sbjct: 1797 SNQIQLFVDDTNVY 1810


>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 158 PHPPLRRSQRRSPWPGRNSVIV 93
           PHP + +  R++ W  R +VIV
Sbjct: 216 PHPDVLKHMRKNGWMDRENVIV 237


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 313 DSSCERSRGGAGSFDSISKRRFDK 242
           DSS + S G + S DS++K+R  K
Sbjct: 244 DSSNKLSNGRSSSLDSLAKKRMSK 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,237,303
Number of Sequences: 5004
Number of extensions: 67436
Number of successful extensions: 198
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)