Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1970
(790 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1217 + 27082452-27083593,27085041-27085158 32 0.45
04_04_0367 + 24736376-24736806,24738257-24738407,24739334-24739420 32 0.45
03_04_0023 + 16537257-16537272,16537515-16537929,16538404-165384... 29 3.2
05_07_0262 + 28769335-28769391,28769732-28769855,28770175-287702... 29 4.2
04_03_1030 + 21838282-21838593 29 4.2
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811... 29 5.6
02_04_0130 + 20025414-20025531,20026357-20026585,20026909-200270... 29 5.6
03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171 28 7.4
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699... 28 9.7
03_06_0309 - 33039006-33039184,33039753-33039912 28 9.7
>12_02_1217 + 27082452-27083593,27085041-27085158
Length = 419
Score = 32.3 bits (70), Expect = 0.45
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 267 ESKEPAPPRDLSQLESHKALSSHPSYLAYSS 359
+S P PPR LS L H A + P YLA+ +
Sbjct: 68 DSPRPPPPRPLSGLFYHTASDNQPGYLAFDA 98
>04_04_0367 + 24736376-24736806,24738257-24738407,24739334-24739420
Length = 222
Score = 32.3 bits (70), Expect = 0.45
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -3
Query: 266 DIEKAVRQEAPYDEHETIRHAHVSTRGLQTVLREWSPHPPLR 141
D + A PY + H H S RG ++R W P PP R
Sbjct: 33 DAQYAFAGVRPYQLADASAHLHSSLRGSLPLVRRWVPSPPPR 74
>03_04_0023 +
16537257-16537272,16537515-16537929,16538404-16538466,
16538604-16538607
Length = 165
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 252 RLFDIESKEPAPPRDLSQLESHKALSSHPSYLAYSSTIFPGRRR 383
RL + E ++ PP L Q + ++ S H S L + + GR+R
Sbjct: 121 RLKEEEEEDEQPPAALLQQQIQESFSRHKSQLVSMTVLMKGRKR 164
>05_07_0262 +
28769335-28769391,28769732-28769855,28770175-28770266,
28770673-28771078,28772057-28772184,28772273-28772332,
28772814-28772963,28772999-28773061,28773062-28773217,
28773361-28773572,28773698-28773796,28774343-28774512,
28774592-28775040
Length = 721
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -2
Query: 225 ARDYPARPCKYPWPANG-AARMVASSTASSFATPIPVARP 109
+R PCK PW G + + SS S A P+ RP
Sbjct: 539 SRPVSDEPCKNPWVMGGFSGNIPTSSQVSQVAKPVAPGRP 578
>04_03_1030 + 21838282-21838593
Length = 103
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = -2
Query: 354 NKLNRRGERTEPCGTPAVRGRGEERVPSTRYRKGGSTRSPV**ARDYPARPC 199
N RRG +PA R EE S++ ++ G+ S R RPC
Sbjct: 35 NPATRRGAEASMASSPAKRRDAEESTASSQAKRRGAKGSTAGTGRGPATRPC 86
>04_04_0214 -
23674270-23676858,23677574-23680843,23680941-23681119,
23681200-23681559,23681645-23682086,23682199-23682332,
23682479-23682680
Length = 2391
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +3
Query: 252 RLFDIE-SKEPAPPRDLSQLE--SHKALSSHPSYLAYSST 362
RLF + ++ P+PPRDL +LE L S YL Y T
Sbjct: 440 RLFPLSHNRNPSPPRDLGELEGVEFPDLPSLDGYLQYWGT 479
>02_04_0130 +
20025414-20025531,20026357-20026585,20026909-20027032,
20027441-20027497,20027613-20027804,20027882-20027959,
20028437-20028619,20028715-20028795,20029196-20029228,
20029448-20029513,20029591-20029683,20030106-20030231,
20030395-20030508,20030973-20031068,20031159-20031256,
20031416-20031831,20032025-20032473,20032810-20032905
Length = 882
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +2
Query: 389 LALFADDTNVYYSSRSKSLIAKKLQSAX*P*DSGSENGA*HQPSEKYCGDNSEGKLHTDF 568
+A+ ++T V + S++ + K S P S +G + S+K C +N+EG+ +
Sbjct: 645 IAVATENTTVSFVEDSETKSSGKFGSFSAPRHSSRSSGRSLEESDKSCPENTEGEAKEN- 703
Query: 569 LPD 577
LPD
Sbjct: 704 LPD 706
>03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171
Length = 1054
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 279 PAPPRDLSQLESHKALSSHPSYLAYSSTIFPGRRRTS*LYSP 404
P P ++ +++ K + +PS L+ S F GR+ LYSP
Sbjct: 240 PRPSKETARMIKKKLVEENPSVLSGSQPAFDGRKN---LYSP 278
>06_01_0906 +
6990892-6991615,6992480-6992679,6992822-6993002,
6993855-6994046,6994492-6994724,6995537-6995638,
6995776-6995826,6996234-6996338,6997287-6997353,
6997946-6997962
Length = 623
Score = 27.9 bits (59), Expect = 9.7
Identities = 22/72 (30%), Positives = 29/72 (40%)
Frame = -2
Query: 324 EPCGTPAVRGRGEERVPSTRYRKGGSTRSPV**ARDYPARPCKYPWPANGAARMVASSTA 145
+P +PA RGRG R + G P D A P P P A+ A++ A
Sbjct: 92 DPASSPAPRGRG-------RKSRRGRPEPP----SDAGAAPHAPPSPPRRGAKKGAAANA 140
Query: 144 SSFATPIPVARP 109
A +PV P
Sbjct: 141 KKAAAEVPVVEP 152
>03_06_0309 - 33039006-33039184,33039753-33039912
Length = 112
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2
Query: 174 AARMVASSTASSFATPIPVARP 109
AA +STA S A PIP+ARP
Sbjct: 2 AAENTNTSTARSMALPIPLARP 23
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,799,147
Number of Sequences: 37544
Number of extensions: 530137
Number of successful extensions: 1616
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1616
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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