Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1970
(790 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 46 6e-05
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 46 6e-05
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 46 8e-05
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 39 0.009
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 39 0.009
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 38 0.012
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 38 0.021
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 36 0.048
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 36 0.063
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 36 0.063
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 33 0.34
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 33 0.44
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 33 0.44
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 33 0.44
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 33 0.44
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 33 0.44
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 32 0.78
U14102-1|AAC46495.1| 299|Drosophila melanogaster putative rever... 31 1.8
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 31 1.8
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 30 4.1
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 29 5.5
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 29 5.5
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 29 5.5
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 29 5.5
BT028852-1|ABI34233.2| 392|Drosophila melanogaster RT01127p pro... 29 9.6
BT028820-1|ABI34201.2| 392|Drosophila melanogaster RT01027p pro... 29 9.6
AF247709-1|AAF63760.1| 392|Drosophila melanogaster myotonix pro... 29 9.6
AF099185-1|AAD39864.1| 392|Drosophila melanogaster homeobox pro... 29 9.6
AE014298-145|ABI30963.1| 927|Drosophila melanogaster CG3019-PF,... 29 9.6
AE014297-3991|AAF56619.1| 81|Drosophila melanogaster CG14244-P... 29 9.6
AE014296-3418|AAN12144.1| 392|Drosophila melanogaster CG3871-PB... 29 9.6
AE014296-3417|AAF51640.3| 392|Drosophila melanogaster CG3871-PA... 29 9.6
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 46.0 bits (104), Expect = 6e-05
Identities = 26/70 (37%), Positives = 38/70 (54%)
Frame = +2
Query: 257 FRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSPSNQLALFADDTNVYYSSRS 436
F + ++S+ R L AGVPQG +DIP++ + L+LFADD VY + S
Sbjct: 648 FSVNLNSSQSARRILNAGVPQGSVLGPTLFNIFTHDIPQATNCVLSLFADDAAVYSAGFS 707
Query: 437 KSLIAKKLQS 466
S I + +QS
Sbjct: 708 YSEINQSMQS 717
Score = 39.5 bits (88), Expect = 0.005
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +3
Query: 603 ITLFRQPIPCARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSK 764
+ + PI ++YLG+ D +TF+ HI + + I+ LYP+I ++SK
Sbjct: 757 LRILDSPIQWVDNIRYLGIIFDKKLTFKYHINNTIMKVNKIICTLYPLINRKSK 810
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 46.0 bits (104), Expect = 6e-05
Identities = 26/70 (37%), Positives = 38/70 (54%)
Frame = +2
Query: 257 FRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSPSNQLALFADDTNVYYSSRS 436
F + ++S+ R L AGVPQG +DIP++ + L+LFADD VY + S
Sbjct: 596 FSVNLNSSQSARRILNAGVPQGSVLGPTLFNIFTHDIPQATNCVLSLFADDAAVYSAGFS 655
Query: 437 KSLIAKKLQS 466
S I + +QS
Sbjct: 656 YSEINQSMQS 665
Score = 39.5 bits (88), Expect = 0.005
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +3
Query: 603 ITLFRQPIPCARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSK 764
+ + PI ++YLG+ D +TF+ HI + + I+ LYP+I ++SK
Sbjct: 705 LRILDSPIQWVDNIRYLGIIFDKKLTFKYHINNTIMKVNKIICTLYPLINRKSK 758
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 45.6 bits (103), Expect = 8e-05
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +3
Query: 597 PPITLFRQPIPCARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSK 764
PP+ + P+P KYLGV LD +TF H+ +R R + + Y ++ RSK
Sbjct: 730 PPVYIEEVPVPQPNAAKYLGVLLDRRLTFSKHVTDIRTRLRAKVAKHYWLLSSRSK 785
Score = 31.9 bits (69), Expect = 1.0
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Frame = +2
Query: 257 FRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSP-----SNQLALFADDTNVY 421
F R S+ + AGVPQG +D+P+ + LA FADD V
Sbjct: 622 FAVRFHSAISTEHNVAAGVPQGSVLGPLLYCLYSHDMPQPDVSLYGKSMLATFADDVCVT 681
Query: 422 YSSRSKSLIAKKLQ 463
Y SR + A +Q
Sbjct: 682 YRSRCEHDAADGIQ 695
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 38.7 bits (86), Expect = 0.009
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Frame = +2
Query: 242 LVEPPFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIP-RSPSNQ-------LAL 397
L E F V+G +SS +P+ AGVPQG +D+P +P + +A
Sbjct: 619 LEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSVFASDMPTHTPVTEVDEEDVLIAT 678
Query: 398 FADDTNVYYSSRSKSLIA 451
+ADDT V ++SKS++A
Sbjct: 679 YADDTAVL--TKSKSILA 694
Score = 34.7 bits (76), Expect = 0.15
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +3
Query: 597 PPITLFRQPIPCARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSK 764
P ++L + I + KYLG+TLD +TF HI +++ + R+ +I R+K
Sbjct: 735 PGVSLNGRLIRHHQAYKYLGITLDRKLTFSRHITNIQQAFRTKVARMSWLIAPRNK 790
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 38.7 bits (86), Expect = 0.009
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Frame = +2
Query: 242 LVEPPFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIP-RSPSNQ-------LAL 397
L E F V+G +SS +P+ AGVPQG +D+P +P + +A
Sbjct: 421 LEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSVFASDMPTHTPVTEVDEEDVLIAT 480
Query: 398 FADDTNVYYSSRSKSLIA 451
+ADDT V ++SKS++A
Sbjct: 481 YADDTAVL--TKSKSILA 496
Score = 34.7 bits (76), Expect = 0.15
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +3
Query: 597 PPITLFRQPIPCARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSK 764
P ++L + I + KYLG+TLD +TF HI +++ + R+ +I R+K
Sbjct: 537 PGVSLNGRLIRHHQAYKYLGITLDRKLTFSRHITNIQQAFRTKVARMSWLIAPRNK 592
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 38.3 bits (85), Expect = 0.012
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = +3
Query: 597 PPITLFRQPIPCARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMI 749
PP+ L P+P A +V YLGV LD +T+R HI++ + + L+ +I
Sbjct: 723 PPLLLNSIPLPKADEVTYLGVHLDRRLTWRRHIEAKKTQLKLKANNLHWLI 773
Score = 35.1 bits (77), Expect = 0.11
Identities = 21/65 (32%), Positives = 28/65 (43%)
Frame = +2
Query: 242 LVEPPFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSPSNQLALFADDTNVY 421
L + F R S+ + AGVPQG DIP + ++ FADDT +
Sbjct: 615 LYDRKFAVRCNTATSTVHTIEAGVPQGSVLGPTLYLIYTADIPTNSRLTVSTFADDTAIL 674
Query: 422 YSSRS 436
SRS
Sbjct: 675 SRSRS 679
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 37.5 bits (83), Expect = 0.021
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 597 PPITLFRQPIPCARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRL 737
P + + +P R +YLG+T+ M F HI S+R R ++G L
Sbjct: 719 PTVRFAGRNLPYVRSCRYLGITVSEGMKFLTHIASLRQRMTGVVGAL 765
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 36.3 bits (80), Expect = 0.048
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +3
Query: 591 LTPPITLFRQPIPCARKVKYLGVTLDASMTFRPHIKSVRDR 713
+T PI L + + KYLG+TLD +TF PH+K+ R
Sbjct: 734 VTAPIELEGVILDQPSQAKYLGITLDKRLTFGPHLKATTRR 774
Score = 33.1 bits (72), Expect = 0.44
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Frame = +2
Query: 257 FRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIP-------RSPSNQ-LALFADDT 412
F RV + S PR + AGVPQG D+P P LA +ADD
Sbjct: 623 FMVRVRNSYSIPRVMRAGVPQGSVLGPLLYSVFTADLPCPNAYHMADPRKALLATYADDI 682
Query: 413 NVYYSSRSKSLIAKKLQ 463
+ YSS + A+ LQ
Sbjct: 683 ALLYSSNCCNEAARGLQ 699
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 35.9 bits (79), Expect = 0.063
Identities = 21/55 (38%), Positives = 29/55 (52%)
Frame = +3
Query: 597 PPITLFRQPIPCARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRS 761
PP+ L IP A +V YLGV LD +T+R HI++ L+ +I RS
Sbjct: 721 PPLVLNNICIPQADEVTYLGVHLDRRLTWRKHIEAKSKHLKLKARNLHWLINARS 775
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 35.9 bits (79), Expect = 0.063
Identities = 21/55 (38%), Positives = 29/55 (52%)
Frame = +3
Query: 597 PPITLFRQPIPCARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRS 761
PP+ L IP A +V YLGV LD +T+R HI++ L+ +I RS
Sbjct: 721 PPLVLNNICIPQADEVTYLGVHLDRRLTWRKHIEAKSKHLKLKARNLHWLINARS 775
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 33.5 bits (73), Expect = 0.34
Identities = 23/71 (32%), Positives = 31/71 (43%)
Frame = +2
Query: 257 FRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSPSNQLALFADDTNVYYSSRS 436
F R + SS + AGVPQG DIP + + FADDT + SRS
Sbjct: 159 FAVRCSSSTSSDFTIEAGVPQGSVLGPILYTLYTADIPTNYQLTIFTFADDTAII--SRS 216
Query: 437 KSLIAKKLQSA 469
+ + +Q A
Sbjct: 217 RCPVKTTMQLA 227
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 33.1 bits (72), Expect = 0.44
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 618 QPIPCARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKCPS 773
Q I K YLGV LD+ +T PH+ V + ++ ++ +RSK P+
Sbjct: 673 QAIKKESKQSYLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPT 724
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 33.1 bits (72), Expect = 0.44
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 618 QPIPCARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKCPS 773
Q I K YLGV LD+ +T PH+ V + ++ ++ +RSK P+
Sbjct: 789 QAIKKESKQSYLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPT 840
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 33.1 bits (72), Expect = 0.44
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 618 QPIPCARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKCPS 773
Q I K YLGV LD+ +T PH+ V + ++ ++ +RSK P+
Sbjct: 789 QAIKKESKQSYLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPT 840
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 33.1 bits (72), Expect = 0.44
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 618 QPIPCARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKCPS 773
Q I K YLGV LD+ +T PH+ V + ++ ++ +RSK P+
Sbjct: 751 QAIKKESKQSYLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPT 802
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 33.1 bits (72), Expect = 0.44
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 618 QPIPCARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKCPS 773
Q I K YLGV LD+ +T PH+ V + ++ ++ +RSK P+
Sbjct: 789 QAIKKESKQSYLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPT 840
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 32.3 bits (70), Expect = 0.78
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 618 QPIPCARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKCPSE 776
Q I K YLGVTLD+ +T H+ + + + +L ++ RSK P++
Sbjct: 801 QTIKKESKQSYLGVTLDSKLTLSSHVTKLLGKYSTAYRKLTWILNGRSKLPTK 853
>U14102-1|AAC46495.1| 299|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 299
Score = 31.1 bits (67), Expect = 1.8
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 618 QPIPCARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKCPSE 776
Q I K YLGV LD+ +T H+ + + ++ ++ +RSK P++
Sbjct: 4 QVIKIESKQSYLGVILDSKLTLSSHVTKLMGKYTTAYRKMTWILNRRSKLPTK 56
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 31.1 bits (67), Expect = 1.8
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 618 QPIPCARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKCPSE 776
Q I K YLGV LD+ +T H+ + + ++ ++ +RSK P++
Sbjct: 789 QVIKIESKQSYLGVILDSKLTLSSHVTKLMGKYTTAYRKMTWILNRRSKLPTK 841
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 29.9 bits (64), Expect = 4.1
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +3
Query: 624 IPCARKVKYLGVTLDASMTFRPHIKSVRDRAAF---ILGRLYPMI 749
I A +KYLGV +D ++F+ H + +AA L R+ P +
Sbjct: 711 IASAETLKYLGVLIDRRLSFKAHARYASKKAAMTAAALARIMPNV 755
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 29.5 bits (63), Expect = 5.5
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 594 TPPITLFRQPIPCARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKCP 770
TPP+ + Q K +YLG+ LD +TF H+ ++ + +L +I K S P
Sbjct: 346 TPPL-INGQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWLIGKNSHLP 403
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 29.5 bits (63), Expect = 5.5
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 594 TPPITLFRQPIPCARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKCP 770
TPP+ + Q K +YLG+ LD +TF H+ ++ + +L +I K S P
Sbjct: 793 TPPL-INGQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWLIGKNSHLP 850
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 29.5 bits (63), Expect = 5.5
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 594 TPPITLFRQPIPCARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKCP 770
TPP+ + Q K +YLG+ LD +TF H+ ++ + +L +I K S P
Sbjct: 793 TPPL-INGQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWLIGKNSHLP 850
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 29.5 bits (63), Expect = 5.5
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 594 TPPITLFRQPIPCARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKCP 770
TPP+ + Q K +YLG+ LD +TF H+ ++ + +L +I K S P
Sbjct: 793 TPPL-INGQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWLIGKNSHLP 850
>BT028852-1|ABI34233.2| 392|Drosophila melanogaster RT01127p
protein.
Length = 392
Score = 28.7 bits (61), Expect = 9.6
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = -3
Query: 257 KAVRQEAPYDEHETIRHAHVSTRGLQTVLREWSPHPPLRRSQRRSPWPGRNSVIVKS 87
K V Q + +E + H+ R Q + ++ PP S + +P NS+I ++
Sbjct: 62 KTVLQLDKFAPYEGVEKDHLLERRFQDITNDYDKSPPPTASTTPTHYPSLNSIIFEN 118
>BT028820-1|ABI34201.2| 392|Drosophila melanogaster RT01027p
protein.
Length = 392
Score = 28.7 bits (61), Expect = 9.6
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = -3
Query: 257 KAVRQEAPYDEHETIRHAHVSTRGLQTVLREWSPHPPLRRSQRRSPWPGRNSVIVKS 87
K V Q + +E + H+ R Q + ++ PP S + +P NS+I ++
Sbjct: 62 KTVLQLDKFAPYEGVEKDHLLERRFQDITNDYDKSPPPTASTTPTHYPSLNSIIFEN 118
>AF247709-1|AAF63760.1| 392|Drosophila melanogaster myotonix
protein.
Length = 392
Score = 28.7 bits (61), Expect = 9.6
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = -3
Query: 257 KAVRQEAPYDEHETIRHAHVSTRGLQTVLREWSPHPPLRRSQRRSPWPGRNSVIVKS 87
K V Q + +E + H+ R Q + ++ PP S + +P NS+I ++
Sbjct: 62 KTVLQLDKFAPYEGVEKDHLLERRFQDITNDYDKSPPPTASTTPTHYPSLNSIIFEN 118
>AF099185-1|AAD39864.1| 392|Drosophila melanogaster homeobox
protein SIX4 protein.
Length = 392
Score = 28.7 bits (61), Expect = 9.6
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = -3
Query: 257 KAVRQEAPYDEHETIRHAHVSTRGLQTVLREWSPHPPLRRSQRRSPWPGRNSVIVKS 87
K V Q + +E + H+ R Q + ++ PP S + +P NS+I ++
Sbjct: 62 KTVLQLDKFAPYEGVEKDHLLERRFQDITNDYDKSPPPTASTTPTHYPSLNSIIFEN 118
>AE014298-145|ABI30963.1| 927|Drosophila melanogaster CG3019-PF,
isoform F protein.
Length = 927
Score = 28.7 bits (61), Expect = 9.6
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 307 SCERSRGGAGSFDSISKRRFDKKPRMMSTRLSGTPM*VPVACKRCCAN 164
S RS+ S S S R ++ R S+RLS P P +RC AN
Sbjct: 821 SRSRSKNVRSSDSSPSSRESSRRRRQKSSRLSREPSSNPPPPRRCPAN 868
>AE014297-3991|AAF56619.1| 81|Drosophila melanogaster CG14244-PA
protein.
Length = 81
Score = 28.7 bits (61), Expect = 9.6
Identities = 11/47 (23%), Positives = 19/47 (40%)
Frame = +1
Query: 202 WACRIVSCSSYGASCRTAFSISSRRNPLLPATSHSWSPTRLCPLTPP 342
W C ++ ++ C+ N +P T+ W P + P PP
Sbjct: 30 WLCSAINSQAHLHKCQPNTGFDQDLNACVPWTAWEWKPCQEPPSRPP 76
>AE014296-3418|AAN12144.1| 392|Drosophila melanogaster CG3871-PB,
isoform B protein.
Length = 392
Score = 28.7 bits (61), Expect = 9.6
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = -3
Query: 257 KAVRQEAPYDEHETIRHAHVSTRGLQTVLREWSPHPPLRRSQRRSPWPGRNSVIVKS 87
K V Q + +E + H+ R Q + ++ PP S + +P NS+I ++
Sbjct: 62 KTVLQLDKFAPYEGVEKDHLLERRFQDITNDYDKSPPPTASTTPTHYPSLNSIIFEN 118
>AE014296-3417|AAF51640.3| 392|Drosophila melanogaster CG3871-PA,
isoform A protein.
Length = 392
Score = 28.7 bits (61), Expect = 9.6
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = -3
Query: 257 KAVRQEAPYDEHETIRHAHVSTRGLQTVLREWSPHPPLRRSQRRSPWPGRNSVIVKS 87
K V Q + +E + H+ R Q + ++ PP S + +P NS+I ++
Sbjct: 62 KTVLQLDKFAPYEGVEKDHLLERRFQDITNDYDKSPPPTASTTPTHYPSLNSIIFEN 118
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,912,978
Number of Sequences: 53049
Number of extensions: 841124
Number of successful extensions: 2615
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 2415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2614
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3654740856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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