Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1970
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    38   0.006
AC090999-1|AAK26146.1|  390|Caenorhabditis elegans Hypothetical ...    36   0.033
AF016687-9|AAK72064.2|  569|Caenorhabditis elegans Hypothetical ...    31   0.94 
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    30   1.6  
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    29   3.8  
AL032634-3|CAE45092.1|  412|Caenorhabditis elegans Hypothetical ...    29   5.0  
Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +2

Query: 257 FRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSPSNQLAL--FADDTNVYYSS 430
           FR R+  T SS +  T GVPQG            NDI      ++A   FADDT + Y+S
Sbjct: 59  FRVRIGQTLSSRKFATCGVPQGAVLSPLLFGIYVNDISSILPEKVACKQFADDTKL-YAS 117

Query: 431 RSKSLIAKKLQSA 469
             K+     LQSA
Sbjct: 118 TPKTESENNLQSA 130


>AC090999-1|AAK26146.1|  390|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.8 protein.
          Length = 390

 Score = 35.9 bits (79), Expect = 0.033
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = -2

Query: 366 ISLTNKLNRRGERTEPCGTPAVRGRGEER 280
           ISLTN     GERT+PCGTP     G E+
Sbjct: 50  ISLTNMPKSTGERTDPCGTPHTAFLGSEK 78


>AF016687-9|AAK72064.2|  569|Caenorhabditis elegans Hypothetical
           protein T21D12.9b protein.
          Length = 569

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 181 CRPRVLTWACRIVSCSSYGASCRTAFSISSRRNPLL 288
           C PR L+   R VS  S   +C +  S+SSRRNP +
Sbjct: 399 CNPRQLS---RFVSVVSVNRNCESRTSLSSRRNPTI 431


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 621 PIPCARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKCP 770
           PI  +   + LG+  D+ +TF+PHIK +   A     +L      +S CP
Sbjct: 188 PISPSNIARDLGILTDSKLTFKPHIKKIVSLALLRCKQLLKSF--KSLCP 235


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/55 (27%), Positives = 22/55 (40%)
 Frame = +2

Query: 299 LTAGVPQGXXXXXXXXXXXXNDIPRSPSNQLALFADDTNVYYSSRSKSLIAKKLQ 463
           L  GVPQG             D+P      L  +ADD ++    +     A+K+Q
Sbjct: 529 LLGGVPQGSVISPNLFTFYLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQ 583


>AL032634-3|CAE45092.1|  412|Caenorhabditis elegans Hypothetical
           protein Y39G8C.4 protein.
          Length = 412

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 544 RGEAPHGFPPGLGGGISHPRLLSLDNPYPAPG 639
           RG    G PPG+ GG   P +  +  P  APG
Sbjct: 233 RGNIHEGGPPGIVGGSGAPGVHGIPGPPGAPG 264


>Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical
           protein F39B2.6 protein.
          Length = 117

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 184 CKRCCANGRLIHRFVVRN 131
           C RCC   + I +FVVRN
Sbjct: 26  CGRCCPKDKAIKKFVVRN 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,258,695
Number of Sequences: 27780
Number of extensions: 399955
Number of successful extensions: 1099
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)