Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1969X
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   4.2  
SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.2  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    25   7.3  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    25   9.6  
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c...    25   9.6  

>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 444  PIFRSSRIFHLCPKCNWNDLLLL 376
            PIF S ++  L   C WND L L
Sbjct: 1820 PIFVSEQLKSLLHSCLWNDTLFL 1842


>SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 107

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +3

Query: 336 LVRQTFKDVQNTYLIIIDHSSYTSDRGGRFESYERSVSFVYYIGKALGKVLADLH 500
           L R  F+ +  +   I  H  +    GG +ES+E  V  VYY        LA+++
Sbjct: 31  LERNVFRHLNYSTNSICSHYQFF---GGHYESFELLVVIVYYFSHVGSFSLAEIY 82


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -3

Query: 355 LNVCLTSSGLFLSI*LLYPGT*KMSFLVTSKL*VK*YPRQRHLSGMRC*NCSGSRRSKLE 176
           L  CL S+ + +   L+Y GT  MS  + +KL    +   +  S  R  N +G   S + 
Sbjct: 178 LQKCLASTSVLMQDALVYIGTANMSTRLEAKLDFMSFSSVKSNSTSRLLNINGITVSMVR 237

Query: 175 P 173
           P
Sbjct: 238 P 238


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 277 GNSSSMYRDIRVRLTRTIQN*SDRRSR 357
           G+  S YR I+++ ++  ++ SDRR R
Sbjct: 277 GSEQSDYRQIKIKKSKKKKSKSDRRKR 303


>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 284 EFPRHIQVIGEVIPSTA 234
           + PRHI+  G VIP+T+
Sbjct: 223 DIPRHIKFKGSVIPATS 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,182,638
Number of Sequences: 5004
Number of extensions: 42219
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)