Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1969X
         (546 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565...    31   0.45 
02_05_0746 - 31451303-31453168,31453243-31453357,31454296-314543...    29   3.2  
07_03_0620 + 20013974-20014253,20014393-20014756,20014944-20015103     27   7.4  
04_04_0006 - 22102663-22103705,22105659-22105671                       27   7.4  
02_05_1253 + 35270040-35270044,35270213-35270297,35270809-352725...    27   7.4  

>03_05_0754 +
           27452203-27452242,27452360-27455611,27456480-27456533,
           27456774-27456872,27456948-27457012,27457476-27457575,
           27458326-27458408,27458494-27458569,27458920-27459698
          Length = 1515

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = +3

Query: 201 EQFQHLIPDRCRCRGYHFTYNLDVTRKLIFYVPGYKSQIDKNNPELVRQTFKDVQNTYLI 380
           EQ +H+  +R   +    TYNLD   + +  + G  S+ +K   E +++   D+   Y  
Sbjct: 515 EQLEHMEKEREEMQRQLDTYNLDNASRDVHCLKGESSEEEKGLHEKLQKALSDLDEAYSA 574

Query: 381 IIDHSSYTS 407
           + +  S  S
Sbjct: 575 VSERESELS 583


>02_05_0746 -
           31451303-31453168,31453243-31453357,31454296-31454351,
           31455057-31455138,31455484-31455517,31455912-31456016,
           31456108-31456387
          Length = 845

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/35 (31%), Positives = 24/35 (68%)
 Frame = -2

Query: 332 WIVLVNLTLISRYIEDEFPRHIQVIGEVIPSTATS 228
           WI  + +TL +  +++ FP+HI+++ E+  + A+S
Sbjct: 421 WISGMVITLSTYLVKEIFPKHIELLQEISSADASS 455


>07_03_0620 + 20013974-20014253,20014393-20014756,20014944-20015103
          Length = 267

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 394 PVTLRTEVEDSRATKDRSVSSITLVKRWAKCWPIYTTKVSVEKY 525
           P TL   V+  RA +D  V    + K W   W    T +   K+
Sbjct: 205 PATLAAMVQGKRAPEDIEVDGYVIPKGWQAFWSPCVTHMDPAKF 248


>04_04_0006 - 22102663-22103705,22105659-22105671
          Length = 351

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/29 (37%), Positives = 23/29 (79%)
 Frame = +3

Query: 450 FVYYIGKALGKVLADLHNKGIRRKIYIVL 536
           +V ++G   G++L+ + NKG+RR+IY+++
Sbjct: 251 YVIFVG---GQILSLVINKGLRRRIYMLI 276


>02_05_1253 +
           35270040-35270044,35270213-35270297,35270809-35272590,
           35272710-35273237
          Length = 799

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +1

Query: 397 VTLRTEVEDSRATKDRSVSSITLVKRWAKCWPIYTTKVSVEKYTL 531
           VTLR    D     DR      L +RW   WP Y+T  S  K+ +
Sbjct: 549 VTLRVRAADDDVLDDR------LGQRWDPWWPSYSTGYSSVKFVI 587


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,426,999
Number of Sequences: 37544
Number of extensions: 244414
Number of successful extensions: 578
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)