Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1969X
(546 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S73849-1|AAB31735.1| 873|Homo sapiens very low density lipoprot... 30 4.6
L22431-1|AAA61344.1| 873|Homo sapiens very low density lipoprot... 30 4.6
L20470-1|AAA53684.1| 873|Homo sapiens very low density lipoprot... 30 4.6
D16532-1|BAA03969.1| 873|Homo sapiens very low density lipoprot... 30 4.6
D16494-1|BAA03946.1| 845|Homo sapiens very low density lipoprot... 30 4.6
D16493-1|BAA03945.1| 873|Homo sapiens very low density lipoprot... 30 4.6
DQ067198-1|AAY46157.1| 873|Homo sapiens very low density lipopr... 30 4.6
BC142653-1|AAI42654.1| 845|Homo sapiens very low density lipopr... 30 4.6
AP001725-2|BAA95548.1| 2298|Homo sapiens C21orf5 protein. 30 4.6
AP000692-1|BAA89431.1| 2298|Homo sapiens C21orf5 protein. 30 4.6
AL450467-4|CAH72453.1| 752|Homo sapiens very low density lipopr... 30 4.6
AL450467-3|CAH72455.1| 845|Homo sapiens very low density lipopr... 30 4.6
AL450467-2|CAH72454.1| 873|Homo sapiens very low density lipopr... 30 4.6
AK092381-1|BAC03874.1| 752|Homo sapiens protein ( Homo sapiens ... 30 4.6
AJ237839-1|CAB41415.1| 2298|Homo sapiens hypothetical protein pr... 30 4.6
AB023150-1|BAA76777.2| 2147|Homo sapiens KIAA0933 protein protein. 30 4.6
BC117190-1|AAI17191.1| 1529|Homo sapiens slit homolog 2 (Drosoph... 29 8.0
AY396742-1|AAR91620.1| 784|Homo sapiens repetin protein. 29 8.0
AY219924-1|AAP48705.1| 784|Homo sapiens repetin protein. 29 8.0
AF133270-1|AAD25539.1| 1525|Homo sapiens SLIT2 protein. 29 8.0
AF055585-1|AAD04309.1| 1521|Homo sapiens neurogenic extracellula... 29 8.0
AB017168-1|BAA35185.1| 1529|Homo sapiens Slit-2 protein protein. 29 8.0
>S73849-1|AAB31735.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 30.3 bits (65), Expect = 4.6
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -2
Query: 335 FWIVLVNLTLISRYIEDEFPRHIQVIGEVIPSTATSIGYEVLKLFW 198
FW L + S I+D+ RH+++I V A ++ + ++W
Sbjct: 484 FWADLSQKAIFSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYW 529
>L22431-1|AAA61344.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 30.3 bits (65), Expect = 4.6
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -2
Query: 335 FWIVLVNLTLISRYIEDEFPRHIQVIGEVIPSTATSIGYEVLKLFW 198
FW L + S I+D+ RH+++I V A ++ + ++W
Sbjct: 484 FWADLSQKAIFSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYW 529
>L20470-1|AAA53684.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 30.3 bits (65), Expect = 4.6
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -2
Query: 335 FWIVLVNLTLISRYIEDEFPRHIQVIGEVIPSTATSIGYEVLKLFW 198
FW L + S I+D+ RH+++I V A ++ + ++W
Sbjct: 484 FWADLSQKAIFSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYW 529
>D16532-1|BAA03969.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 30.3 bits (65), Expect = 4.6
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -2
Query: 335 FWIVLVNLTLISRYIEDEFPRHIQVIGEVIPSTATSIGYEVLKLFW 198
FW L + S I+D+ RH+++I V A ++ + ++W
Sbjct: 484 FWADLSQKAIFSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYW 529
>D16494-1|BAA03946.1| 845|Homo sapiens very low density lipoprotein
receptor protein.
Length = 845
Score = 30.3 bits (65), Expect = 4.6
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -2
Query: 335 FWIVLVNLTLISRYIEDEFPRHIQVIGEVIPSTATSIGYEVLKLFW 198
FW L + S I+D+ RH+++I V A ++ + ++W
Sbjct: 484 FWADLSQKAIFSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYW 529
>D16493-1|BAA03945.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 30.3 bits (65), Expect = 4.6
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -2
Query: 335 FWIVLVNLTLISRYIEDEFPRHIQVIGEVIPSTATSIGYEVLKLFW 198
FW L + S I+D+ RH+++I V A ++ + ++W
Sbjct: 484 FWADLSQKAIFSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYW 529
>DQ067198-1|AAY46157.1| 873|Homo sapiens very low density
lipoprotein receptor protein.
Length = 873
Score = 30.3 bits (65), Expect = 4.6
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -2
Query: 335 FWIVLVNLTLISRYIEDEFPRHIQVIGEVIPSTATSIGYEVLKLFW 198
FW L + S I+D+ RH+++I V A ++ + ++W
Sbjct: 484 FWADLSQKAIFSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYW 529
>BC142653-1|AAI42654.1| 845|Homo sapiens very low density
lipoprotein receptor protein.
Length = 845
Score = 30.3 bits (65), Expect = 4.6
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -2
Query: 335 FWIVLVNLTLISRYIEDEFPRHIQVIGEVIPSTATSIGYEVLKLFW 198
FW L + S I+D+ RH+++I V A ++ + ++W
Sbjct: 484 FWADLSQKAIFSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYW 529
>AP001725-2|BAA95548.1| 2298|Homo sapiens C21orf5 protein.
Length = 2298
Score = 30.3 bits (65), Expect = 4.6
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +3
Query: 381 IIDHSSYTSDRGGRFESYERSVSFVYYIGKALGKVLADLHNKGIRRKIYIVLDT 542
II H+ D+G R E+ R S ++++ + + HN+ R +++VLD+
Sbjct: 915 IICHALLDPDKGTRLEALFR-FSVIWHLTREIQGSRVTSHNRSFDRSLFVVLDS 967
>AP000692-1|BAA89431.1| 2298|Homo sapiens C21orf5 protein.
Length = 2298
Score = 30.3 bits (65), Expect = 4.6
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +3
Query: 381 IIDHSSYTSDRGGRFESYERSVSFVYYIGKALGKVLADLHNKGIRRKIYIVLDT 542
II H+ D+G R E+ R S ++++ + + HN+ R +++VLD+
Sbjct: 915 IICHALLDPDKGTRLEALFR-FSVIWHLTREIQGSRVTSHNRSFDRSLFVVLDS 967
>AL450467-4|CAH72453.1| 752|Homo sapiens very low density
lipoprotein receptor protein.
Length = 752
Score = 30.3 bits (65), Expect = 4.6
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -2
Query: 335 FWIVLVNLTLISRYIEDEFPRHIQVIGEVIPSTATSIGYEVLKLFW 198
FW L + S I+D+ RH+++I V A ++ + ++W
Sbjct: 363 FWADLSQKAIFSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYW 408
>AL450467-3|CAH72455.1| 845|Homo sapiens very low density
lipoprotein receptor protein.
Length = 845
Score = 30.3 bits (65), Expect = 4.6
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -2
Query: 335 FWIVLVNLTLISRYIEDEFPRHIQVIGEVIPSTATSIGYEVLKLFW 198
FW L + S I+D+ RH+++I V A ++ + ++W
Sbjct: 484 FWADLSQKAIFSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYW 529
>AL450467-2|CAH72454.1| 873|Homo sapiens very low density
lipoprotein receptor protein.
Length = 873
Score = 30.3 bits (65), Expect = 4.6
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -2
Query: 335 FWIVLVNLTLISRYIEDEFPRHIQVIGEVIPSTATSIGYEVLKLFW 198
FW L + S I+D+ RH+++I V A ++ + ++W
Sbjct: 484 FWADLSQKAIFSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYW 529
>AK092381-1|BAC03874.1| 752|Homo sapiens protein ( Homo sapiens
cDNA FLJ35062 fis, clone OCBBF2019195, highly similar to
VERY LOW-DENSITY LIPOPROTEIN RECEPTOR PRECURSOR. ).
Length = 752
Score = 30.3 bits (65), Expect = 4.6
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -2
Query: 335 FWIVLVNLTLISRYIEDEFPRHIQVIGEVIPSTATSIGYEVLKLFW 198
FW L + S I+D+ RH+++I V A ++ + ++W
Sbjct: 363 FWADLSQKAIFSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYW 408
>AJ237839-1|CAB41415.1| 2298|Homo sapiens hypothetical protein
protein.
Length = 2298
Score = 30.3 bits (65), Expect = 4.6
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +3
Query: 381 IIDHSSYTSDRGGRFESYERSVSFVYYIGKALGKVLADLHNKGIRRKIYIVLDT 542
II H+ D+G R E+ R S ++++ + + HN+ R +++VLD+
Sbjct: 915 IICHALLDPDKGTRLEALFR-FSVIWHLTREIQGSRVTSHNRSFDRSLFVVLDS 967
>AB023150-1|BAA76777.2| 2147|Homo sapiens KIAA0933 protein protein.
Length = 2147
Score = 30.3 bits (65), Expect = 4.6
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +3
Query: 381 IIDHSSYTSDRGGRFESYERSVSFVYYIGKALGKVLADLHNKGIRRKIYIVLDT 542
II H+ D+G R E+ R S ++++ + + HN+ R +++VLD+
Sbjct: 764 IICHALLDPDKGTRLEALFR-FSVIWHLTREIQGSRVTSHNRSFDRSLFVVLDS 816
>BC117190-1|AAI17191.1| 1529|Homo sapiens slit homolog 2
(Drosophila) protein.
Length = 1529
Score = 29.5 bits (63), Expect = 8.0
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +3
Query: 222 PDRCRCRGYHFTYNLDVTRKLIFYVPGYKSQIDKNNPE--LVRQT--FKDVQNTYLIIID 389
P++CRC G + K+ ++P Y +++ NN E ++ T FK + I
Sbjct: 507 PEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFS 566
Query: 390 HSSYTSDRGGRFE 428
++ T G FE
Sbjct: 567 NNKITDIEEGAFE 579
>AY396742-1|AAR91620.1| 784|Homo sapiens repetin protein.
Length = 784
Score = 29.5 bits (63), Expect = 8.0
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 323 EQSRTSQTDVQGRSKHVSNNNRSFQ-LHFGQ 412
+ S SQTD QG+S H S +R Q H+GQ
Sbjct: 315 QSSHYSQTDRQGQSSHYSQPDRQGQSSHYGQ 345
>AY219924-1|AAP48705.1| 784|Homo sapiens repetin protein.
Length = 784
Score = 29.5 bits (63), Expect = 8.0
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 323 EQSRTSQTDVQGRSKHVSNNNRSFQ-LHFGQ 412
+ S SQTD QG+S H S +R Q H+GQ
Sbjct: 315 QSSHYSQTDRQGQSSHYSQPDRQGQSSHYGQ 345
>AF133270-1|AAD25539.1| 1525|Homo sapiens SLIT2 protein.
Length = 1525
Score = 29.5 bits (63), Expect = 8.0
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +3
Query: 222 PDRCRCRGYHFTYNLDVTRKLIFYVPGYKSQIDKNNPE--LVRQT--FKDVQNTYLIIID 389
P++CRC G + K+ ++P Y +++ NN E ++ T FK + I
Sbjct: 503 PEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFS 562
Query: 390 HSSYTSDRGGRFE 428
++ T G FE
Sbjct: 563 NNKITDIEEGAFE 575
>AF055585-1|AAD04309.1| 1521|Homo sapiens neurogenic extracellular
slit protein Slit2 protein.
Length = 1521
Score = 29.5 bits (63), Expect = 8.0
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +3
Query: 222 PDRCRCRGYHFTYNLDVTRKLIFYVPGYKSQIDKNNPE--LVRQT--FKDVQNTYLIIID 389
P++CRC G + K+ ++P Y +++ NN E ++ T FK + I
Sbjct: 499 PEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFS 558
Query: 390 HSSYTSDRGGRFE 428
++ T G FE
Sbjct: 559 NNKITDIEEGAFE 571
>AB017168-1|BAA35185.1| 1529|Homo sapiens Slit-2 protein protein.
Length = 1529
Score = 29.5 bits (63), Expect = 8.0
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +3
Query: 222 PDRCRCRGYHFTYNLDVTRKLIFYVPGYKSQIDKNNPE--LVRQT--FKDVQNTYLIIID 389
P++CRC G + K+ ++P Y +++ NN E ++ T FK + I
Sbjct: 507 PEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFS 566
Query: 390 HSSYTSDRGGRFE 428
++ T G FE
Sbjct: 567 NNKITDIEEGAFE 579
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,708,147
Number of Sequences: 237096
Number of extensions: 1380935
Number of successful extensions: 2796
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2796
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -