Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1969X
(546 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80452-2|AAK68180.1| 729|Caenorhabditis elegans Hypothetical pr... 31 0.54
AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ... 30 1.2
Z50872-4|CAA90757.2| 498|Caenorhabditis elegans Hypothetical pr... 27 6.7
AF025451-14|AAB71199.1| 577|Caenorhabditis elegans Hypothetical... 27 6.7
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 27 6.7
Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 27 8.8
>U80452-2|AAK68180.1| 729|Caenorhabditis elegans Hypothetical
protein C16C8.2 protein.
Length = 729
Score = 31.1 bits (67), Expect = 0.54
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Frame = -1
Query: 540 CPIQCIFFDGYLCCVDRPTLC---PTLYQCNRRN*PIFRSSRIFHLCPKCNWNDLLL 379
CP+ C F +G C+DR LC T+ +C ++ S C C + L
Sbjct: 88 CPVSCDFCNGITTCIDRHRLCGFWATIRECETN--AVWMLSNCPKACKACKGRSVTL 142
>AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical
protein K09F6.3 protein.
Length = 1360
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 303 YKSQIDKNNPELVRQ---TFKDVQNTYLIIIDHSSYTSDRGGRFESYERSVSFV 455
YK I+KN PEL R+ F+ +N+ +++ H S R F S+E FV
Sbjct: 1135 YKGWIEKNAPELPREILNIFRVARNSKSLVV-HCSNGIGRSAAFVSWELCYHFV 1187
>Z50872-4|CAA90757.2| 498|Caenorhabditis elegans Hypothetical
protein C05D12.1 protein.
Length = 498
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -2
Query: 335 FWIVLVNLTLISRYIEDEFPRHIQVIGEVI 246
+W++ N LISRY + FPR+ +++G +
Sbjct: 253 WWVLASNAILISRYFKPLFPRN-KLLGTAV 281
>AF025451-14|AAB71199.1| 577|Caenorhabditis elegans Hypothetical
protein C24H12.1 protein.
Length = 577
Score = 27.5 bits (58), Expect = 6.7
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Frame = +3
Query: 213 HLIPDRCRCRGYHFTYNLDVTRKLIFYVPGYKSQIDKNNPELVRQTFKDVQNTYLI---- 380
H + ++ R GY + + D+ + F+ YK +++K +P L T +++ I
Sbjct: 110 HFMMNKARIEGYDWATHEDINDHISFFCTEYK-KVNK-SPCLSYGTSQELTKLLDILNGS 167
Query: 381 -IIDHSSYTSDRGGRFESYERSVSFVYYIGKALGKVLAD 494
+IDH T +R F ++ ++S + K+L D
Sbjct: 168 FLIDHVELTMERDEIFGEFKSALSHPLFRKCHFVKLLGD 206
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -2
Query: 320 VNLTLISRYIEDEFPRHIQVIGEVIPSTATSIGYEVL 210
V+L + S Y +E H ++I ++IP TSI Y+++
Sbjct: 2603 VHLIMKSEY--EELAEHDEMIADIIPRDETSIQYKMI 2637
>Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical
protein C09H6.1b protein.
Length = 1309
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -1
Query: 516 DGYLCCVDRPTLCPTLYQCNRRN*PIFRSSRIFHLCPKCNWN 391
D + CC P PT+ +C R F++ C C+W+
Sbjct: 582 DVFFCCNMCPYKAPTMNRCQRHYDKHFKNDEF--KCQYCSWS 621
>Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical
protein C09H6.1a protein.
Length = 1311
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -1
Query: 516 DGYLCCVDRPTLCPTLYQCNRRN*PIFRSSRIFHLCPKCNWN 391
D + CC P PT+ +C R F++ C C+W+
Sbjct: 582 DVFFCCNMCPYKAPTMNRCQRHYDKHFKNDEF--KCQYCSWS 621
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 27.1 bits (57), Expect = 8.8
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Frame = +3
Query: 306 KSQIDKNNPELVRQTFKDVQNTYLIIIDHSSYTSDRGG----------RFESYERSVSFV 455
+ + +N+ L RQ + + +N Y II Y + G RFE S+ +
Sbjct: 2375 EQSLTQNDISLRRQDYMNRKNAYSII-KWLDYVESKQGETNSVVKQRIRFEFQHASLPAL 2433
Query: 456 YYIGKALGKVLADLHNKGIRRKIYI 530
+ I L L LH IR ++Y+
Sbjct: 2434 FEIRNRLEVSLGGLHESDIRERVYL 2458
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 27.1 bits (57), Expect = 8.8
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Frame = +3
Query: 306 KSQIDKNNPELVRQTFKDVQNTYLIIIDHSSYTSDRGG----------RFESYERSVSFV 455
+ + +N+ L RQ + + +N Y II Y + G RFE S+ +
Sbjct: 2375 EQSLTQNDISLRRQDYMNRKNAYSII-KWLDYVESKQGETNSVVKQRIRFEFQHASLPAL 2433
Query: 456 YYIGKALGKVLADLHNKGIRRKIYI 530
+ I L L LH IR ++Y+
Sbjct: 2434 FEIRNRLEVSLGGLHESDIRERVYL 2458
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,078,899
Number of Sequences: 27780
Number of extensions: 237374
Number of successful extensions: 664
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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