Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1969X
         (546 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   0.88 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    24   1.2  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   4.7  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   4.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.2  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               21   8.2  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 8   AVDVSRSSLRKMNYLIYCVLLRAVCVSAIWAPFKALLY 121
           AV + R   R  NYL+  + +  +CV+ +  P  ALLY
Sbjct: 65  AVFLVRKLRRPCNYLLVSLAVSDLCVALLVMPM-ALLY 101


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 90  LFGHHSKRFCIRIGSNVTTTRP 155
           +FGHH  R    I +  T TRP
Sbjct: 317 IFGHHLNRLGREISTYFTFTRP 338


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 268 M*RGNSSSMYRDIRVRLTRTIQN*SDRRSRTFKTRI 375
           M R  S+  Y D + +  R   N  D RSRT + R+
Sbjct: 1   MKRNISNYSYHDEKFKQLRNEDNKIDLRSRTKEERL 36


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 268 M*RGNSSSMYRDIRVRLTRTIQN*SDRRSRTFKTRI 375
           M R  S+  Y D + +  R   N  D RSRT + R+
Sbjct: 1   MKRNISNYSYHDEKFKQLRNEDNKIDLRSRTKEERL 36


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +1

Query: 151 DPKFRRKEVQVYFYDFQNNFNTSYPIDVAVEGIT 252
           DP     E+++   D  NN+ T   I+ +    T
Sbjct: 168 DPLVVNPEIELPQLDISNNYTTDCTIEYSTGNFT 201


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 46  LFNLLCFVTCSL 81
           L N  CF+TC+L
Sbjct: 72  LTNYSCFITCAL 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,539
Number of Sequences: 438
Number of extensions: 2899
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)