Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1967
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 67 2e-12
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 30 0.26
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 29 0.81
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 28 1.4
SPAC1782.05 |||phosphotyrosyl phosphatase activator homolog|Schi... 28 1.4
SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|... 28 1.4
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 28 1.4
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 1.9
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 27 1.9
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 27 3.3
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 27 3.3
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 27 3.3
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc... 26 4.3
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 26 4.3
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 26 5.7
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 26 5.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 5.7
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 7.5
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc... 25 7.5
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.5
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 7.5
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 7.5
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 7.5
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac... 25 7.5
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 9.9
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe... 25 9.9
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 25 9.9
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 9.9
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 67.3 bits (157), Expect = 2e-12
Identities = 29/55 (52%), Positives = 42/55 (76%)
Frame = +1
Query: 505 KSADLDILMHEELGVSKAILNSVVFCHQEDSSWPLDEGKKVKERFDEIFDADKYS 669
+ A+LD + LGVSKA+L+ V+FCHQE+S WPL E +K+RFDEIF++ +Y+
Sbjct: 130 RCAELDSQVPLSLGVSKALLDYVIFCHQEESFWPLSEPANLKKRFDEIFESLRYA 184
Score = 56.4 bits (130), Expect = 4e-09
Identities = 34/102 (33%), Positives = 56/102 (54%)
Frame = +2
Query: 251 LRYAITGQMPPGSRNECFVHDAKVNRSTEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKX 430
L+YA TG +PP ++ F+HD K+ EVL QVKL N ++ TRS+++ ++ K
Sbjct: 47 LKYATTGILPPNTKGGAFIHDPKICGEKEVLAQVKLAFRNTNQVKMICTRSLQL-SVKKT 105
Query: 431 KTKFQTLDSFLSTVDESGKTKDVSSRVPIWTSLCMRNLGFQK 556
+ +TLD L + ++ +T +S+R S +LG K
Sbjct: 106 TRQQKTLDGQLLILKDNERT-TISNRCAELDSQVPLSLGVSK 146
Score = 55.6 bits (128), Expect = 6e-09
Identities = 28/49 (57%), Positives = 36/49 (73%)
Frame = +3
Query: 108 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECL 254
M+ + ++I GIRSF ++ + I F SPLTLI+GQNG GKTTIIECL
Sbjct: 1 MSCIDRMSIMGIRSF--DNRSRESIQFFSPLTLIVGQNGSGKTTIIECL 47
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 30.3 bits (65), Expect = 0.26
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 201 TLILGQNGCGKTTIIECLDMQSLVK 275
TL++G NG GK+T+++ L +SL K
Sbjct: 33 TLLVGANGAGKSTLLKLLSGKSLAK 57
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 28.7 bits (61), Expect = 0.81
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +3
Query: 183 LFDSP-LTLILGQNGCGKTTIIECL 254
LF P L LI+G NG GK+TI+ +
Sbjct: 29 LFPGPYLNLIIGPNGTGKSTIVSAI 53
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 27.9 bits (59), Expect = 1.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 198 LTLILGQNGCGKTTII 245
+T++LG GCGKTT I
Sbjct: 43 ITIVLGHTGCGKTTQI 58
>SPAC1782.05 |||phosphotyrosyl phosphatase activator
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 419 LAKXKTKFQTLDSFLSTVDESGKTKDVSSRVPIWTSL 529
L K ++ +DSF+ +DE+ K K +S+ +P +S+
Sbjct: 25 LFKEGDAYKLIDSFICDLDEAVKDKPISASIPQSSSI 61
>SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 177
Score = 27.9 bits (59), Expect = 1.4
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -2
Query: 629 LTFFPSSSGQLESSWWQNTTEFSMAFETPSSSCIR 525
+TFF S + + +SWW ++ M F + C++
Sbjct: 53 VTFFGSVTEHVSNSWWIKLYDYMMTFISGEKLCMQ 87
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 189 DSPLTLILGQNGCGKTTIIECL 254
+S L LI G +GCGK+T ++ L
Sbjct: 104 ESRLLLICGPSGCGKSTAVQVL 125
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 177 RILFDSPLTLILGQNGCGKTTIIECL 254
R L L++G GCGKTT+ + L
Sbjct: 1181 RCLLAKEPVLLVGDTGCGKTTVCQIL 1206
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 189 DSPLTLILGQNGCGKTTIIECLDMQSLVKCRLVAGTNA 302
D+ + ++LG+NG GKTT + + S +K + T A
Sbjct: 374 DAEIIVLLGENGTGKTTFCKWMAKNSDLKISMKPQTIA 411
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 174 QRILFDSPLTLILGQNGCGKTTIIECL 254
Q + LT ++G++G GKTT++ L
Sbjct: 905 QGFVVPGKLTALMGESGAGKTTLLNVL 931
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 204 LILGQNGCGKTTIIECL 254
L+LG + GKTTI++CL
Sbjct: 20 LLLGLDNAGKTTILKCL 36
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 156 PEDTDEQRILFDSPLTLIL-GQNGCGKTTIIECLDMQS 266
PE D L P L+L G GCGKT + + L QS
Sbjct: 112 PEVFDTHGGLLSCPKGLLLYGPPGCGKTMLAKALAKQS 149
>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 134
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -3
Query: 310 MNKAFVPATRRHLTSDCISKHSIIVVLPHPFCPNISVN 197
M++A TR+ +T+ + + ++V + HP NIS N
Sbjct: 1 MSEAVTIRTRKFMTNRLLQRKQMVVDILHPGKANISKN 38
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 26.2 bits (55), Expect = 4.3
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -2
Query: 653 SKISSNLSLTFF-PSSSGQLESSWWQNTTEFSMAFETPSSSCI--RMSKSALLKIH 495
S SSN SL P + +++ W NT+ + F +S+CI R+ + L IH
Sbjct: 298 SNASSNFSLWHNEPLAEPVVQNVLWVNTSSVLVQFTNRNSTCITARLLDTELKSIH 353
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/54 (22%), Positives = 23/54 (42%)
Frame = -2
Query: 650 KISSNLSLTFFPSSSGQLESSWWQNTTEFSMAFETPSSSCIRMSKSALLKIHLL 489
K S+++ L F+ +E W+N ++ SC R+ K + +L
Sbjct: 102 KSSNSMHLKFYEQLKDDMEKIGWKNFVVLNLKAHRDLKSCFRVIKGGSFGLGVL 155
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.8 bits (54), Expect = 5.7
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = +3
Query: 207 ILGQNGCGKTTIIECL 254
++G NGCGK+T++ +
Sbjct: 475 VVGHNGCGKSTLLRAI 490
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 207 ILGQNGCGKTTIIECL 254
ILG NG GK+T+I+ L
Sbjct: 724 ILGPNGAGKSTLIKVL 739
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 5.7
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 268 SDCISKHSIIVVLPHPFCPNISVNGESNSMRCSSVSSGP-KLLIPLIA 128
S S SII + P ++ VN + N++ +SVS+G +L +P ++
Sbjct: 50 SQSYSSTSIIHSVSSPVDCSLDVNNQINTINITSVSAGTNELFLPTLS 97
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 201 TLILGQNGCGKTTIIECLDMQSLVKCRLVAGTN 299
+LILG G GKTT I L L K + + T+
Sbjct: 951 SLILGMPGTGKTTTISSLIRSLLAKKKKILLTS 983
>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
Pho4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 610 DEGKKVKERFDEIFDADKY 666
D G++V ER+ E+FD D Y
Sbjct: 140 DLGRQVFERYYELFDTDVY 158
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 7.5
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -2
Query: 671 SLYLSASKISSNLSLTFFPSSSGQLESSWWQNTTEFSM--AFETPSSSCIRMSKSA 510
SL S+S+ SS+ S + SSS L SS + T S A + SSS + S S+
Sbjct: 82 SLVSSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSSSHALSSSSSSLVASSSSS 137
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -2
Query: 656 ASKISSNLSLTFFPSSSGQLESSWWQNTTEFSMAFETPSSSCIRMSKSALL 504
+S +SS+ S + SSS + S+++ N+T + + S S +S +L
Sbjct: 400 SSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSKPIL 450
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 7.5
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -2
Query: 659 SASKISSNLSLTFFPSSSGQLESSWWQNTTEFSMAFETPSSSCIRMSKSA 510
S+S SS+ + T PSSS SS +++ S + + SSS S S+
Sbjct: 141 SSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 190
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 189 DSPLTLILGQNGCGKTTIIECLDMQSLVK 275
+S L +I G GCGK+T I +++ K
Sbjct: 646 NSQLLIISGDTGCGKSTQIPAFLLENSTK 674
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.4 bits (53), Expect = 7.5
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 344 GQVKLKI-VNAKDKQLEVTRSMKVTALAKXKTKFQTLDSFLSTVDESGKTKDVSSRV 511
G LK+ V ++ +L VT S +T K + Q LDS++S D K+ V
Sbjct: 21 GSSDLKVRVRFREPKLLVTHSGHITEQPKYEHLEQYLDSYVSLEDGDHDPKEAKELV 77
>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -3
Query: 310 MNKAFVPATRRHLTSDCISKHSIIVVLPHPFCPNISVN 197
M++A TR+ +T+ + + ++V + HP N+S N
Sbjct: 1 MSEAVTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKN 38
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 201 TLILGQNGCGKTTIIECLDMQSLVKCRLVAGTN 299
T I+G NG GK+ +++ + VK + TN
Sbjct: 28 TSIIGPNGAGKSNLMDAISFVLGVKSSHLRSTN 60
>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 9.9
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = -3
Query: 193 ESNSMRCSSVSSGPKLLIPLIASDFTPAILYVRF----SYGLTL 74
ES SM + S PK IPL ILYV F SYG+T+
Sbjct: 243 ESVSMTAAE-SKNPKKAIPLAVRQTFWRILYVYFGISISYGITV 285
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +3
Query: 126 LAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKT 236
L++ + ++ R + PL+LI G G GKT
Sbjct: 385 LSVPNLPKLNASQSEAVRAVLSKPLSLIQGPPGTGKT 421
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 287 SRNECFVHDAKVNRSTEVLGQVKLKIVNAKDKQLEVTRSMK 409
S+ EC K+N + ++KLK+ A K E+ S +
Sbjct: 578 SQAECVSFQEKINELNSQIDELKLKLNEANKKYQELAISFE 618
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,816,073
Number of Sequences: 5004
Number of extensions: 58081
Number of successful extensions: 227
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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