Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1967
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0314 - 17600970-17600974,17601230-17601357,17601832-176019... 64 1e-10
02_04_0067 - 19425019-19425288,19425393-19425647,19425766-194259... 32 0.36
12_01_0833 - 7730761-7731030,7731171-7731425,7731565-7731736,773... 32 0.48
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 32 0.48
11_06_0031 + 19425011-19425113,19425552-19425637,19425732-194258... 31 0.63
02_02_0464 - 10552347-10552466,10552683-10552928,10553866-105541... 29 2.6
02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,305... 29 2.6
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093... 29 3.4
02_01_0403 - 2938242-2941334 29 3.4
03_02_0859 - 11853928-11854138,11854225-11854683,11854760-118549... 28 5.9
09_04_0195 - 15509412-15509580,15510136-15510467,15510494-155109... 28 7.8
>02_03_0314 -
17600970-17600974,17601230-17601357,17601832-17601924,
17602145-17602257,17602520-17602627,17602724-17602828,
17603185-17603355,17603474-17603652,17603741-17603969,
17604841-17604955,17605137-17605312,17606060-17606143,
17606463-17606630,17607011-17607097,17607201-17607323
Length = 627
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/61 (44%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Frame = +1
Query: 490 KRCI-FKSADLDILMHEELGVSKAILNSVVFCHQEDSSWPLDEGKKVKERFDEIFDADKY 666
K C+ ++ AD+D + +GVSKAIL +V+F HQ++S+WPL + +K++FD+IF A +Y
Sbjct: 155 KVCLSYRCADMDREIPALMGVSKAILENVIFVHQDESNWPLQDPSTLKKKFDDIFSATRY 214
Query: 667 S 669
+
Sbjct: 215 T 215
Score = 58.8 bits (136), Expect = 4e-09
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Frame = +2
Query: 251 LRYAITGQMPPGSRN-ECFVHDAKVNRSTEVLGQVKLKIVNAKDKQLEVTRSMKVTALAK 427
L+ + TG++PP SR+ FVHD KV TE GQ+KL+ A K + RS ++T A
Sbjct: 47 LKLSCTGELPPNSRSGHTFVHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKAS 106
Query: 428 XKTKFQTLDSFLSTVD-ESGKTKDVSSRVPI 517
K +F+ ++S L T++ +G+ V + VP+
Sbjct: 107 -KMEFKAIESVLQTINPHTGEDFLVVNTVPM 136
Score = 57.2 bits (132), Expect = 1e-08
Identities = 29/51 (56%), Positives = 36/51 (70%)
Frame = +3
Query: 108 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLDM 260
M+ V + I+GIRSF PE+ + I F PLTLI+G NG GKTTIIECL +
Sbjct: 1 MSTVDKMLIKGIRSFDPENKNV--ITFFKPLTLIVGPNGAGKTTIIECLKL 49
>02_04_0067 -
19425019-19425288,19425393-19425647,19425766-19425937,
19426069-19426302,19426523-19426656,19427663-19427746,
19428355-19428645,19428788-19429120,19429317-19429390,
19429464-19429644,19429993-19430096,19430232-19430392,
19430727-19431040,19431583-19431864,19432431-19432732,
19433176-19433266,19433368-19433421,19438917-19438993,
19439081-19439240,19439410-19439494,19439574-19440130
Length = 1404
Score = 32.3 bits (70), Expect = 0.36
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +3
Query: 168 DEQRILFDSPLTLILGQNGCGKTTIIECL 254
D IL S LTL+LG GCGKTT++ L
Sbjct: 177 DVTGILKPSRLTLLLGPPGCGKTTLLLAL 205
>12_01_0833 -
7730761-7731030,7731171-7731425,7731565-7731736,
7731873-7732106,7732362-7732495,7734116-7734199,
7735086-7735376,7735566-7735898,7736351-7736424,
7736558-7736653,7736876-7737029,7737118-7737221,
7737325-7737485,7737774-7738087,7738950-7739231,
7739909-7740210,7740513-7740713,7740924-7741014,
7741424-7741500,7741595-7741754,7742026-7742110,
7742194-7742288
Length = 1322
Score = 31.9 bits (69), Expect = 0.48
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 180 ILFDSPLTLILGQNGCGKTTIIECL 254
I+ S +TL+LG GCGKTT+++ L
Sbjct: 27 IIKPSRITLLLGPPGCGKTTLLKAL 51
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +3
Query: 159 EDTDEQRILFDSPLT-LILGQNGCGKTTII 245
E TDE++ + PLT ILG++G GKTT++
Sbjct: 1002 ELTDEEQAIIRFPLTSFILGRSGTGKTTVL 1031
>11_06_0031 +
19425011-19425113,19425552-19425637,19425732-19425829,
19425950-19426067,19426200-19426289,19426770-19427074,
19427162-19427357,19427435-19427617,19427713-19427982,
19428906-19429151,19429633-19429704,19430087-19430104
Length = 594
Score = 31.5 bits (68), Expect = 0.63
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +3
Query: 189 DSPLTLILGQNGCGKTTIIECLDMQSLVKCRLVAGT 296
DS + ++LG+NG GKTT I L L+K V GT
Sbjct: 372 DSQIVVMLGENGTGKTTFIRML--AGLLKPDTVEGT 405
>02_02_0464 -
10552347-10552466,10552683-10552928,10553866-10554135,
10554231-10554413,10554493-10554688,10554775-10555079,
10555515-10555604,10555689-10555806,10555991-10556088,
10556187-10556272,10557622-10557736
Length = 608
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 189 DSPLTLILGQNGCGKTTIIECL 254
DS + ++LG+NG GKTT I L
Sbjct: 376 DSQIIVMLGENGTGKTTFIRML 397
>02_01_0417 -
3048519-3048710,3048903-3050600,3050622-3050909,
3052308-3052377,3052417-3052668,3053235-3055297
Length = 1520
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 662 LSASKISSNLSLTFFPSSSGQLESSWWQ-NTTEFSMAFETPSSSCIRMSKSALLKI 498
L ISSNL FPS++ + SS + N + S PS+ CI S A+L +
Sbjct: 155 LQVLNISSNLFTGAFPSTTWEKTSSLFAINASNNSFTGYIPSTFCISSSSFAVLDL 210
>05_07_0329 -
29308867-29308932,29309040-29309159,29309245-29309364,
29309566-29310123,29310199-29310258,29310839-29310904,
29310993-29311103,29311167-29311257,29311349-29311449,
29311534-29311641,29311737-29314205
Length = 1289
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 135 RGIRSFGPEDTDEQRILFD--SPLTLILGQNGCGKTTIIECL 254
RG GP DE + D SP+ ILG GKT +++C+
Sbjct: 678 RGASKKGPIKEDETKNGSDLRSPICCILGHVDTGKTKLLDCI 719
>02_01_0403 - 2938242-2941334
Length = 1030
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 662 LSASKISSNLSLTFFPSSSGQLESSWWQ-NTTEFSMAFETPSSSCIRMSKSALLKI 498
L ISSNL FPS++ Q+ S N + S P+S C+ ALL++
Sbjct: 140 LQVLNISSNLFTGIFPSTTWQVMKSLVAINASTNSFTGNIPTSFCVSAPSFALLEL 195
>03_02_0859 -
11853928-11854138,11854225-11854683,11854760-11854991,
11855064-11855187,11855276-11855960,11856429-11856735,
11856832-11858188
Length = 1124
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +3
Query: 102 YNMAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNG 224
Y+ G+++L I G+R E+ E ++ ++ T +LG+ G
Sbjct: 616 YSSLGLRTLVI-GVRELSQEEFQEWQMAYEKASTALLGRGG 655
>09_04_0195 -
15509412-15509580,15510136-15510467,15510494-15510900,
15511467-15511581,15512711-15514044,15514558-15514819
Length = 872
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 213 GQNGCGKTTIIECLDMQSLVKCRLVAGTNAL 305
GQ+ + +++CL MQ+++KC A T +L
Sbjct: 708 GQSNFKISFLLDCLRMQNVLKCSTYANTKSL 738
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,306,636
Number of Sequences: 37544
Number of extensions: 338056
Number of successful extensions: 1031
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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