Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1967
         (672 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    26   1.2  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    25   1.6  
U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette...    25   2.2  
U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette...    25   2.2  
U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette...    25   2.2  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   6.6  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 117 VKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKT 236
           +K + I+G +S+  +   E    FD    +++G+NG GK+
Sbjct: 3   IKQVIIQGFKSYREQTVVEP---FDKRHNVVVGRNGSGKS 39


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 198 LTLILGQNGCGKTTIIECLDMQSLVKCRLVA 290
           L +ILG NG GK+ I+  + +     C+L++
Sbjct: 32  LNIILGPNGTGKSAIVAGIVLGMGGNCKLLS 62


>U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 198 LTLILGQNGCGKTTIIECLDMQS 266
           L  ++G +G GKTT++  L  +S
Sbjct: 128 LLAVMGSSGAGKTTLLNALAFRS 150


>U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 198 LTLILGQNGCGKTTIIECLDMQS 266
           L  ++G +G GKTT++  L  +S
Sbjct: 128 LLAVMGSSGAGKTTLLNALAFRS 150


>U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 673

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 198 LTLILGQNGCGKTTIIECLDMQS 266
           L  ++G +G GKTT++  L  +S
Sbjct: 106 LLAVMGSSGAGKTTLLNALAFRS 128


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.4 bits (48), Expect = 6.6
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 186 FDSPLTLILGQNGCGKTTIIECL 254
           F+    L++G+NG GK+ I+  +
Sbjct: 105 FNKRANLLVGKNGSGKSAILAAM 127


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 695,428
Number of Sequences: 2352
Number of extensions: 13319
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 67322955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)