Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1967
(672 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75311-1|CAA99729.1| 1318|Homo sapiens RAD50 homologue hsRAD50 p... 81 3e-15
U63139-1|AAB07119.1| 1312|Homo sapiens Rad50 protein. 81 3e-15
BC108282-1|AAI08283.1| 723|Homo sapiens RAD50 protein protein. 81 3e-15
BC073850-1|AAH73850.1| 723|Homo sapiens RAD50 protein protein. 81 3e-15
BC062603-1|AAH62603.1| 557|Homo sapiens RAD50 protein protein. 81 3e-15
AF057299-1|AAD50325.1| 1312|Homo sapiens RAD50-2 protein protein. 81 3e-15
AF057300-1|AAD50326.1| 1173|Homo sapiens truncated RAD50 protein... 77 8e-14
BC140005-1|AAI40006.1| 110|Homo sapiens RAD50 protein protein. 66 1e-10
BC037946-1|AAH37946.1| 238|Homo sapiens HELB protein protein. 32 2.1
AK024464-1|BAB15754.1| 575|Homo sapiens FLJ00057 protein protein. 32 2.1
AF319995-1|AAM73554.1| 1087|Homo sapiens helicase B protein. 32 2.1
S62198-1|AAB27059.1| 289|Homo sapiens flvi-2/bmi-1 protein. 31 2.8
L13689-1|AAA19873.1| 326|Homo sapiens BMI-1 protein. 31 2.8
CR456911-1|CAG33192.1| 326|Homo sapiens COMMD3 protein. 31 2.8
BT019450-1|AAV38257.1| 326|Homo sapiens B lymphoma Mo-MLV inser... 31 2.8
BC011652-1|AAH11652.1| 326|Homo sapiens BMI1 polycomb ring fing... 31 2.8
AL158211-10|CAI15958.1| 326|Homo sapiens BMI1 polycomb ring fin... 31 2.8
X97187-1|CAA65825.1| 1704|Homo sapiens ABC-C transporter protein. 31 5.0
U78735-1|AAC50967.1| 1704|Homo sapiens ABC3 protein. 31 5.0
DQ073080-1|AAY57325.1| 1704|Homo sapiens ATP-binding cassette, s... 31 5.0
AB210044-1|BAE06126.1| 1708|Homo sapiens ABCA3 variant protein p... 31 5.0
AB070929-1|BAB86781.1| 1704|Homo sapiens lamellar body membrane ... 31 5.0
>Z75311-1|CAA99729.1| 1318|Homo sapiens RAD50 homologue hsRAD50
protein.
Length = 1318
Score = 81.4 bits (192), Expect = 3e-15
Identities = 34/54 (62%), Positives = 44/54 (81%)
Frame = +1
Query: 505 KSADLDILMHEELGVSKAILNSVVFCHQEDSSWPLDEGKKVKERFDEIFDADKY 666
K A++D M LGVSKA+LN+V+FCHQEDS+WPL EGK +K++FDEIF A +Y
Sbjct: 138 KCAEIDREMISSLGVSKAVLNNVIFCHQEDSNWPLSEGKALKQKFDEIFSATRY 191
Score = 62.9 bits (146), Expect = 1e-09
Identities = 28/43 (65%), Positives = 35/43 (81%)
Frame = +3
Query: 126 LAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECL 254
++I G+RSFG ED D+Q I F SPLT+++G NG GKTTIIECL
Sbjct: 13 MSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECL 55
Score = 61.7 bits (143), Expect = 2e-09
Identities = 35/102 (34%), Positives = 57/102 (55%)
Frame = +2
Query: 251 LRYAITGQMPPGSRNECFVHDAKVNRSTEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKX 430
L+Y TG PPG++ FVHD KV + T+V Q++L+ + + + V RSM T +K
Sbjct: 55 LKYICTGDFPPGTKGNTFVHDPKVAQETDVRAQIRLQFRDVNGELIAVQRSMVCTQKSK- 113
Query: 431 KTKFQTLDSFLSTVDESGKTKDVSSRVPIWTSLCMRNLGFQK 556
KT+F+TL+ + T + G+ +SS+ + +LG K
Sbjct: 114 KTEFKTLEGVI-TRTKHGEKVSLSSKCAEIDREMISSLGVSK 154
>U63139-1|AAB07119.1| 1312|Homo sapiens Rad50 protein.
Length = 1312
Score = 81.4 bits (192), Expect = 3e-15
Identities = 34/54 (62%), Positives = 44/54 (81%)
Frame = +1
Query: 505 KSADLDILMHEELGVSKAILNSVVFCHQEDSSWPLDEGKKVKERFDEIFDADKY 666
K A++D M LGVSKA+LN+V+FCHQEDS+WPL EGK +K++FDEIF A +Y
Sbjct: 132 KCAEIDREMISSLGVSKAVLNNVIFCHQEDSNWPLSEGKALKQKFDEIFSATRY 185
Score = 66.1 bits (154), Expect = 1e-10
Identities = 29/49 (59%), Positives = 39/49 (79%)
Frame = +3
Query: 108 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECL 254
M+ ++ ++I G+RSFG ED D+Q I F SPLT+++G NG GKTTIIECL
Sbjct: 1 MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECL 49
Score = 61.7 bits (143), Expect = 2e-09
Identities = 35/102 (34%), Positives = 57/102 (55%)
Frame = +2
Query: 251 LRYAITGQMPPGSRNECFVHDAKVNRSTEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKX 430
L+Y TG PPG++ FVHD KV + T+V Q++L+ + + + V RSM T +K
Sbjct: 49 LKYICTGDFPPGTKGNTFVHDPKVAQETDVRAQIRLQFRDVNGELIAVQRSMVCTQKSK- 107
Query: 431 KTKFQTLDSFLSTVDESGKTKDVSSRVPIWTSLCMRNLGFQK 556
KT+F+TL+ + T + G+ +SS+ + +LG K
Sbjct: 108 KTEFKTLEGVI-TRTKHGEKVSLSSKCAEIDREMISSLGVSK 148
>BC108282-1|AAI08283.1| 723|Homo sapiens RAD50 protein protein.
Length = 723
Score = 81.4 bits (192), Expect = 3e-15
Identities = 34/54 (62%), Positives = 44/54 (81%)
Frame = +1
Query: 505 KSADLDILMHEELGVSKAILNSVVFCHQEDSSWPLDEGKKVKERFDEIFDADKY 666
K A++D M LGVSKA+LN+V+FCHQEDS+WPL EGK +K++FDEIF A +Y
Sbjct: 132 KCAEIDREMISSLGVSKAVLNNVIFCHQEDSNWPLSEGKALKQKFDEIFSATRY 185
Score = 66.1 bits (154), Expect = 1e-10
Identities = 29/49 (59%), Positives = 39/49 (79%)
Frame = +3
Query: 108 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECL 254
M+ ++ ++I G+RSFG ED D+Q I F SPLT+++G NG GKTTIIECL
Sbjct: 1 MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECL 49
Score = 61.7 bits (143), Expect = 2e-09
Identities = 35/102 (34%), Positives = 57/102 (55%)
Frame = +2
Query: 251 LRYAITGQMPPGSRNECFVHDAKVNRSTEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKX 430
L+Y TG PPG++ FVHD KV + T+V Q++L+ + + + V RSM T +K
Sbjct: 49 LKYICTGDFPPGTKGNTFVHDPKVAQETDVRAQIRLQFRDVNGELIAVQRSMVCTQKSK- 107
Query: 431 KTKFQTLDSFLSTVDESGKTKDVSSRVPIWTSLCMRNLGFQK 556
KT+F+TL+ + T + G+ +SS+ + +LG K
Sbjct: 108 KTEFKTLEGVI-TRTKHGEKVSLSSKCAEIDREMISSLGVSK 148
>BC073850-1|AAH73850.1| 723|Homo sapiens RAD50 protein protein.
Length = 723
Score = 81.4 bits (192), Expect = 3e-15
Identities = 34/54 (62%), Positives = 44/54 (81%)
Frame = +1
Query: 505 KSADLDILMHEELGVSKAILNSVVFCHQEDSSWPLDEGKKVKERFDEIFDADKY 666
K A++D M LGVSKA+LN+V+FCHQEDS+WPL EGK +K++FDEIF A +Y
Sbjct: 132 KCAEIDREMISSLGVSKAVLNNVIFCHQEDSNWPLSEGKALKQKFDEIFSATRY 185
Score = 66.1 bits (154), Expect = 1e-10
Identities = 29/49 (59%), Positives = 39/49 (79%)
Frame = +3
Query: 108 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECL 254
M+ ++ ++I G+RSFG ED D+Q I F SPLT+++G NG GKTTIIECL
Sbjct: 1 MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECL 49
Score = 61.7 bits (143), Expect = 2e-09
Identities = 35/102 (34%), Positives = 57/102 (55%)
Frame = +2
Query: 251 LRYAITGQMPPGSRNECFVHDAKVNRSTEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKX 430
L+Y TG PPG++ FVHD KV + T+V Q++L+ + + + V RSM T +K
Sbjct: 49 LKYICTGDFPPGTKGNTFVHDPKVAQETDVRAQIRLQFRDVNGELIAVQRSMVCTQKSK- 107
Query: 431 KTKFQTLDSFLSTVDESGKTKDVSSRVPIWTSLCMRNLGFQK 556
KT+F+TL+ + T + G+ +SS+ + +LG K
Sbjct: 108 KTEFKTLEGVI-TRTKHGEKVSLSSKCAEIDREMISSLGVSK 148
>BC062603-1|AAH62603.1| 557|Homo sapiens RAD50 protein protein.
Length = 557
Score = 81.4 bits (192), Expect = 3e-15
Identities = 34/54 (62%), Positives = 44/54 (81%)
Frame = +1
Query: 505 KSADLDILMHEELGVSKAILNSVVFCHQEDSSWPLDEGKKVKERFDEIFDADKY 666
K A++D M LGVSKA+LN+V+FCHQEDS+WPL EGK +K++FDEIF A +Y
Sbjct: 132 KCAEIDREMISSLGVSKAVLNNVIFCHQEDSNWPLSEGKALKQKFDEIFSATRY 185
Score = 66.1 bits (154), Expect = 1e-10
Identities = 29/49 (59%), Positives = 39/49 (79%)
Frame = +3
Query: 108 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECL 254
M+ ++ ++I G+RSFG ED D+Q I F SPLT+++G NG GKTTIIECL
Sbjct: 1 MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECL 49
Score = 61.7 bits (143), Expect = 2e-09
Identities = 35/102 (34%), Positives = 57/102 (55%)
Frame = +2
Query: 251 LRYAITGQMPPGSRNECFVHDAKVNRSTEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKX 430
L+Y TG PPG++ FVHD KV + T+V Q++L+ + + + V RSM T +K
Sbjct: 49 LKYICTGDFPPGTKGNTFVHDPKVAQETDVRAQIRLQFRDVNGELIAVQRSMVCTQKSK- 107
Query: 431 KTKFQTLDSFLSTVDESGKTKDVSSRVPIWTSLCMRNLGFQK 556
KT+F+TL+ + T + G+ +SS+ + +LG K
Sbjct: 108 KTEFKTLEGVI-TRTKHGEKVSLSSKCAEIDREMISSLGVSK 148
>AF057299-1|AAD50325.1| 1312|Homo sapiens RAD50-2 protein protein.
Length = 1312
Score = 81.4 bits (192), Expect = 3e-15
Identities = 34/54 (62%), Positives = 44/54 (81%)
Frame = +1
Query: 505 KSADLDILMHEELGVSKAILNSVVFCHQEDSSWPLDEGKKVKERFDEIFDADKY 666
K A++D M LGVSKA+LN+V+FCHQEDS+WPL EGK +K++FDEIF A +Y
Sbjct: 132 KCAEIDREMISSLGVSKAVLNNVIFCHQEDSNWPLSEGKALKQKFDEIFSATRY 185
Score = 66.1 bits (154), Expect = 1e-10
Identities = 29/49 (59%), Positives = 39/49 (79%)
Frame = +3
Query: 108 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECL 254
M+ ++ ++I G+RSFG ED D+Q I F SPLT+++G NG GKTTIIECL
Sbjct: 1 MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECL 49
Score = 61.7 bits (143), Expect = 2e-09
Identities = 35/102 (34%), Positives = 57/102 (55%)
Frame = +2
Query: 251 LRYAITGQMPPGSRNECFVHDAKVNRSTEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKX 430
L+Y TG PPG++ FVHD KV + T+V Q++L+ + + + V RSM T +K
Sbjct: 49 LKYICTGDFPPGTKGNTFVHDPKVAQETDVRAQIRLQFRDVNGELIAVQRSMVCTQKSK- 107
Query: 431 KTKFQTLDSFLSTVDESGKTKDVSSRVPIWTSLCMRNLGFQK 556
KT+F+TL+ + T + G+ +SS+ + +LG K
Sbjct: 108 KTEFKTLEGVI-TRTKHGEKVSLSSKCAEIDREMISSLGVSK 148
>AF057300-1|AAD50326.1| 1173|Homo sapiens truncated RAD50 protein
protein.
Length = 1173
Score = 76.6 bits (180), Expect = 8e-14
Identities = 31/46 (67%), Positives = 39/46 (84%)
Frame = +1
Query: 529 MHEELGVSKAILNSVVFCHQEDSSWPLDEGKKVKERFDEIFDADKY 666
M LGVSKA+LN+V+FCHQEDS+WPL EGK +K++FDEIF A +Y
Sbjct: 1 MISSLGVSKAVLNNVIFCHQEDSNWPLSEGKALKQKFDEIFSATRY 46
>BC140005-1|AAI40006.1| 110|Homo sapiens RAD50 protein protein.
Length = 110
Score = 66.1 bits (154), Expect = 1e-10
Identities = 29/49 (59%), Positives = 39/49 (79%)
Frame = +3
Query: 108 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECL 254
M+ ++ ++I G+RSFG ED D+Q I F SPLT+++G NG GKTTIIECL
Sbjct: 1 MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECL 49
Score = 53.2 bits (122), Expect = 8e-07
Identities = 24/61 (39%), Positives = 36/61 (59%)
Frame = +2
Query: 251 LRYAITGQMPPGSRNECFVHDAKVNRSTEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKX 430
L+Y TG PPG++ FVHD KV + T+V Q++L+ + + + V RSM T +K
Sbjct: 49 LKYICTGDFPPGTKGNTFVHDPKVAQETDVRAQIRLQFRDVNGELIAVQRSMVCTQKSKK 108
Query: 431 K 433
K
Sbjct: 109 K 109
>BC037946-1|AAH37946.1| 238|Homo sapiens HELB protein protein.
Length = 238
Score = 31.9 bits (69), Expect = 2.1
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 180 ILFDSPLTLILGQNGCGKTTIIECL 254
++ +P+T+I G+ GCGKTTI+ L
Sbjct: 177 MICSNPVTVISGKGGCGKTTIVSRL 201
>AK024464-1|BAB15754.1| 575|Homo sapiens FLJ00057 protein protein.
Length = 575
Score = 31.9 bits (69), Expect = 2.1
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 180 ILFDSPLTLILGQNGCGKTTIIECL 254
++ +P+T+I G+ GCGKTTI+ L
Sbjct: 465 MICSNPVTVISGKGGCGKTTIVSRL 489
>AF319995-1|AAM73554.1| 1087|Homo sapiens helicase B protein.
Length = 1087
Score = 31.9 bits (69), Expect = 2.1
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 180 ILFDSPLTLILGQNGCGKTTIIECL 254
++ +P+T+I G+ GCGKTTI+ L
Sbjct: 464 MICSNPVTVISGKGGCGKTTIVSRL 488
>S62198-1|AAB27059.1| 289|Homo sapiens flvi-2/bmi-1 protein.
Length = 289
Score = 31.5 bits (68), Expect = 2.8
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 307 NKAFVPATRRHLTSDCISKHSIIVVLPHPFCPNIS--VNGESNS 182
+KA PA TS C+ S V PHP P+IS +NG SNS
Sbjct: 245 DKANSPAGGIPSTSSCLPSPSTPVQSPHPQFPHISSTMNGTSNS 288
>L13689-1|AAA19873.1| 326|Homo sapiens BMI-1 protein.
Length = 326
Score = 31.5 bits (68), Expect = 2.8
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 307 NKAFVPATRRHLTSDCISKHSIIVVLPHPFCPNIS--VNGESNS 182
+KA PA TS C+ S V PHP P+IS +NG SNS
Sbjct: 256 DKANSPAGGVPSTSSCLPSPSTPVQSPHPQFPHISSTMNGTSNS 299
>CR456911-1|CAG33192.1| 326|Homo sapiens COMMD3 protein.
Length = 326
Score = 31.5 bits (68), Expect = 2.8
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 307 NKAFVPATRRHLTSDCISKHSIIVVLPHPFCPNIS--VNGESNS 182
+KA PA TS C+ S V PHP P+IS +NG SNS
Sbjct: 256 DKANSPAGGIPSTSSCLPSPSTPVQSPHPQFPHISSTMNGTSNS 299
>BT019450-1|AAV38257.1| 326|Homo sapiens B lymphoma Mo-MLV
insertion region (mouse) protein.
Length = 326
Score = 31.5 bits (68), Expect = 2.8
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 307 NKAFVPATRRHLTSDCISKHSIIVVLPHPFCPNIS--VNGESNS 182
+KA PA TS C+ S V PHP P+IS +NG SNS
Sbjct: 256 DKANSPAGGIPSTSSCLPSPSTPVQSPHPQFPHISSTMNGTSNS 299
>BC011652-1|AAH11652.1| 326|Homo sapiens BMI1 polycomb ring finger
oncogene protein.
Length = 326
Score = 31.5 bits (68), Expect = 2.8
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 307 NKAFVPATRRHLTSDCISKHSIIVVLPHPFCPNIS--VNGESNS 182
+KA PA TS C+ S V PHP P+IS +NG SNS
Sbjct: 256 DKANSPAGGIPSTSSCLPSPSTPVQSPHPQFPHISSTMNGTSNS 299
>AL158211-10|CAI15958.1| 326|Homo sapiens BMI1 polycomb ring finger
oncogene protein.
Length = 326
Score = 31.5 bits (68), Expect = 2.8
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 307 NKAFVPATRRHLTSDCISKHSIIVVLPHPFCPNIS--VNGESNS 182
+KA PA TS C+ S V PHP P+IS +NG SNS
Sbjct: 256 DKANSPAGGIPSTSSCLPSPSTPVQSPHPQFPHISSTMNGTSNS 299
>X97187-1|CAA65825.1| 1704|Homo sapiens ABC-C transporter protein.
Length = 1704
Score = 30.7 bits (66), Expect = 5.0
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +3
Query: 108 MAGVKSLAIRGIRSFGPEDT----DEQRILFDSPLTLILGQNGCGKTTIIECL 254
+AG+K + + G +D D L++ +T++LG NG GKTT + L
Sbjct: 527 VAGIKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSML 579
>U78735-1|AAC50967.1| 1704|Homo sapiens ABC3 protein.
Length = 1704
Score = 30.7 bits (66), Expect = 5.0
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +3
Query: 108 MAGVKSLAIRGIRSFGPEDT----DEQRILFDSPLTLILGQNGCGKTTIIECL 254
+AG+K + + G +D D L++ +T++LG NG GKTT + L
Sbjct: 527 VAGIKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSML 579
>DQ073080-1|AAY57325.1| 1704|Homo sapiens ATP-binding cassette,
sub-family A (ABC1), member 3 protein.
Length = 1704
Score = 30.7 bits (66), Expect = 5.0
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +3
Query: 108 MAGVKSLAIRGIRSFGPEDT----DEQRILFDSPLTLILGQNGCGKTTIIECL 254
+AG+K + + G +D D L++ +T++LG NG GKTT + L
Sbjct: 527 VAGIKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSML 579
>AB210044-1|BAE06126.1| 1708|Homo sapiens ABCA3 variant protein
protein.
Length = 1708
Score = 30.7 bits (66), Expect = 5.0
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +3
Query: 108 MAGVKSLAIRGIRSFGPEDT----DEQRILFDSPLTLILGQNGCGKTTIIECL 254
+AG+K + + G +D D L++ +T++LG NG GKTT + L
Sbjct: 531 VAGIKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSML 583
>AB070929-1|BAB86781.1| 1704|Homo sapiens lamellar body membrane
specific ATP-binding cassette protein protein.
Length = 1704
Score = 30.7 bits (66), Expect = 5.0
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +3
Query: 108 MAGVKSLAIRGIRSFGPEDT----DEQRILFDSPLTLILGQNGCGKTTIIECL 254
+AG+K + + G +D D L++ +T++LG NG GKTT + L
Sbjct: 527 VAGIKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSML 579
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,177,958
Number of Sequences: 237096
Number of extensions: 1983639
Number of successful extensions: 4446
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 4253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4441
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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