Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1967
(672 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 65 4e-11
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 65 4e-11
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 65 4e-11
AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical ... 31 0.99
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr... 29 2.3
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond... 29 2.3
AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical ... 29 2.3
U41536-4|AAK39238.2| 419|Caenorhabditis elegans Defective fasci... 28 5.3
AF176087-1|AAD55066.1| 419|Caenorhabditis elegans nuclear hormo... 28 5.3
U10414-9|AAA19072.1| 712|Caenorhabditis elegans Hypothetical pr... 28 6.9
AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transport... 28 6.9
Z69635-6|CAA93461.1| 695|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z50071-4|CAA90409.2| 1301|Caenorhabditis elegans Hypothetical pr... 27 9.2
U28993-8|AAK31496.1| 632|Caenorhabditis elegans C.elegans homeo... 27 9.2
U28993-7|AAL27244.1| 641|Caenorhabditis elegans C.elegans homeo... 27 9.2
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 65.3 bits (152), Expect = 4e-11
Identities = 26/54 (48%), Positives = 38/54 (70%)
Frame = +1
Query: 505 KSADLDILMHEELGVSKAILNSVVFCHQEDSSWPLDEGKKVKERFDEIFDADKY 666
K D + + + LGV +A+ V+FCHQEDS+WPL E K++K+RFD+IF K+
Sbjct: 145 KVCDFNTALLKHLGVPRAVFKYVIFCHQEDSTWPLSEPKELKKRFDDIFQLTKF 198
Score = 54.4 bits (125), Expect = 7e-08
Identities = 30/50 (60%), Positives = 32/50 (64%)
Frame = +3
Query: 108 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLD 257
MA L IRGIRS G ED D +I F SP TLI G NG GKTT IE L+
Sbjct: 15 MAKFLRLHIRGIRSVGDEDHDVHKIDFLSPCTLISGPNGTGKTTTIEALN 64
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
protein T04H1.4a protein.
Length = 1298
Score = 65.3 bits (152), Expect = 4e-11
Identities = 26/54 (48%), Positives = 38/54 (70%)
Frame = +1
Query: 505 KSADLDILMHEELGVSKAILNSVVFCHQEDSSWPLDEGKKVKERFDEIFDADKY 666
K D + + + LGV +A+ V+FCHQEDS+WPL E K++K+RFD+IF K+
Sbjct: 131 KVCDFNTALLKHLGVPRAVFKYVIFCHQEDSTWPLSEPKELKKRFDDIFQLTKF 184
Score = 54.4 bits (125), Expect = 7e-08
Identities = 30/50 (60%), Positives = 32/50 (64%)
Frame = +3
Query: 108 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLD 257
MA L IRGIRS G ED D +I F SP TLI G NG GKTT IE L+
Sbjct: 1 MAKFLRLHIRGIRSVGDEDHDVHKIDFLSPCTLISGPNGTGKTTTIEALN 50
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 65.3 bits (152), Expect = 4e-11
Identities = 26/54 (48%), Positives = 38/54 (70%)
Frame = +1
Query: 505 KSADLDILMHEELGVSKAILNSVVFCHQEDSSWPLDEGKKVKERFDEIFDADKY 666
K D + + + LGV +A+ V+FCHQEDS+WPL E K++K+RFD+IF K+
Sbjct: 131 KVCDFNTALLKHLGVPRAVFKYVIFCHQEDSTWPLSEPKELKKRFDDIFQLTKF 184
Score = 54.4 bits (125), Expect = 7e-08
Identities = 30/50 (60%), Positives = 32/50 (64%)
Frame = +3
Query: 108 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLD 257
MA L IRGIRS G ED D +I F SP TLI G NG GKTT IE L+
Sbjct: 1 MAKFLRLHIRGIRSVGDEDHDVHKIDFLSPCTLISGPNGTGKTTTIEALN 50
>AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical
protein T05C3.2 protein.
Length = 1733
Score = 30.7 bits (66), Expect = 0.99
Identities = 14/29 (48%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Frame = +3
Query: 162 DTDEQRILFDSPLTLIL-GQNGCGKTTII 245
D +Q +L +S L +IL G+NGCGKT+++
Sbjct: 446 DCAKQYVLGNSTLPIILQGENGCGKTSLM 474
>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical
protein R13G10.1 protein.
Length = 1469
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 186 FDSPLTLILGQNGCGKTTIIECL 254
F LT+ILG NG GK+ +I+ L
Sbjct: 113 FHKNLTMILGPNGSGKSNVIDAL 135
>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
condensation protein protein.
Length = 1469
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 186 FDSPLTLILGQNGCGKTTIIECL 254
F LT+ILG NG GK+ +I+ L
Sbjct: 113 FHKNLTMILGPNGSGKSNVIDAL 135
>AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical
protein Y39E4B.1 protein.
Length = 610
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3
Query: 189 DSPLTLILGQNGCGKTTIIECL 254
DS + ++LG+NG GKTT+I+ +
Sbjct: 380 DSEIIVMLGENGTGKTTMIKMM 401
>U41536-4|AAK39238.2| 419|Caenorhabditis elegans Defective
fasciculation of axonsprotein 1 protein.
Length = 419
Score = 28.3 bits (60), Expect = 5.3
Identities = 32/121 (26%), Positives = 43/121 (35%), Gaps = 4/121 (3%)
Frame = +1
Query: 298 MLCS*CKSE*INRSTRSSEIKDCQCKRQTVGGDKVHEGDCLSQXKDKISNPGFFSFYC** 477
+ C+ C S RS R I CQ DK H C + K N G
Sbjct: 117 LACNGC-SGFFKRSVRRRLIYRCQAGTGNCVVDKAHRNQCQACRLKKCLNKGMNKDAVQN 175
Query: 478 KWQ--NKRCIFKSADLD--ILMHEELGVSKAILNSVVFCHQEDSSWPLDEGKKVKERFDE 645
+ Q N I + D+D E G AI+ +EDS +GK E+ D
Sbjct: 176 ERQPRNTATIRPALDMDPQNFFREYAGAVSAIMGHSNMMKREDSPSSASDGKTEDEKKDS 235
Query: 646 I 648
+
Sbjct: 236 L 236
>AF176087-1|AAD55066.1| 419|Caenorhabditis elegans nuclear hormone
receptor FAX-1 protein.
Length = 419
Score = 28.3 bits (60), Expect = 5.3
Identities = 32/121 (26%), Positives = 43/121 (35%), Gaps = 4/121 (3%)
Frame = +1
Query: 298 MLCS*CKSE*INRSTRSSEIKDCQCKRQTVGGDKVHEGDCLSQXKDKISNPGFFSFYC** 477
+ C+ C S RS R I CQ DK H C + K N G
Sbjct: 117 LACNGC-SGFFKRSVRRRLIYRCQAGTGNCVVDKAHRNQCQACRLKKCLNKGMNKDAVQN 175
Query: 478 KWQ--NKRCIFKSADLD--ILMHEELGVSKAILNSVVFCHQEDSSWPLDEGKKVKERFDE 645
+ Q N I + D+D E G AI+ +EDS +GK E+ D
Sbjct: 176 ERQPRNTATIRPALDMDPQNFFREYAGAVSAIMGHSNMMKREDSPSSASDGKTEDEKKDS 235
Query: 646 I 648
+
Sbjct: 236 L 236
>U10414-9|AAA19072.1| 712|Caenorhabditis elegans Hypothetical
protein F42A10.1 protein.
Length = 712
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +3
Query: 207 ILGQNGCGKTTIIECLDMQSLVKCRLVAGTNALFMMQK 320
++G+NG GKTT+++ + Q L ++ AG + L + Q+
Sbjct: 209 LVGRNGIGKTTLLKMISSQQL---KIPAGISMLSVEQE 243
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = +3
Query: 207 ILGQNGCGKTTIIECL--DMQSLVKCRLV 287
I+G+NG GKTT+++ L D+Q V R V
Sbjct: 528 IVGENGAGKTTLLKLLLDDLQPSVGLRNV 556
>AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transporter
family protein 2 protein.
Length = 1551
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 183 LFDSPLTLILGQNGCGKTTIIECL 254
L++ +T +LG NG GKTT + L
Sbjct: 357 LYEGQITGLLGHNGAGKTTTMSIL 380
>Z69635-6|CAA93461.1| 695|Caenorhabditis elegans Hypothetical
protein F19B6.4 protein.
Length = 695
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 198 LTLILGQNGCGKTTIIECLDMQSL 269
LT I+G +G GKTT++ L ++L
Sbjct: 131 LTFIMGSSGAGKTTLLNILTGRNL 154
>Z50071-4|CAA90409.2| 1301|Caenorhabditis elegans Hypothetical
protein T07D4.3 protein.
Length = 1301
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 189 DSPLTLILGQNGCGKTTIIECLDMQSLVKCRLVAGTNAL 305
++ +TLI G+ GCGK+T + ++S ++ A NA+
Sbjct: 396 ENRVTLIKGETGCGKSTQVAQFLLESFLENSNGASFNAV 434
>U28993-8|AAK31496.1| 632|Caenorhabditis elegans C.elegans homeobox
protein 38,isoform a protein.
Length = 632
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = -3
Query: 307 NKAFVPATRRHLTSDCISKHSIIVVLPHPFCPNISVNGESNSMRCSSVSSGPKL--LIPL 134
+ F+ T R + + ++ + + PHP P+ S + +++ + SS P+L L P+
Sbjct: 30 SSTFINNTGRGFAEE-LPENFLDTISPHPITPSASTSSATSATEEPATSSAPQLASLAPM 88
Query: 133 IASDFTPA 110
S P+
Sbjct: 89 SMSSEQPS 96
>U28993-7|AAL27244.1| 641|Caenorhabditis elegans C.elegans homeobox
protein 38,isoform b protein.
Length = 641
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = -3
Query: 307 NKAFVPATRRHLTSDCISKHSIIVVLPHPFCPNISVNGESNSMRCSSVSSGPKL--LIPL 134
+ F+ T R + + ++ + + PHP P+ S + +++ + SS P+L L P+
Sbjct: 30 SSTFINNTGRGFAEE-LPENFLDTISPHPITPSASTSSATSATEEPATSSAPQLASLAPM 88
Query: 133 IASDFTPA 110
S P+
Sbjct: 89 SMSSEQPS 96
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,449,417
Number of Sequences: 27780
Number of extensions: 319445
Number of successful extensions: 1018
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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