Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1966
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    28   1.3  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   1.8  
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    27   1.8  
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    27   2.3  
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    27   2.3  
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    27   3.1  
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    27   3.1  
SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.1  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    26   5.4  
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    26   5.4  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    26   5.4  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   7.1  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   7.1  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    25   7.1  
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    25   9.4  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    25   9.4  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   9.4  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    25   9.4  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    25   9.4  

>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = +3

Query: 282 STNPPMTDEERDNLIKELMSKNRNRQLETLVREMKNKRQFMNEETLKKLFKHYSLDGKPE 461
           S+   +T  E   L +E  + NRN  L++L      +R F+N    + L      DG   
Sbjct: 162 SSPSSITANEIARLCQE--ANNRNYLLQSLTSATDARRAFLNNPNYRLLSAIIFQDGPSN 219

Query: 462 MIIILQKYC 488
           +  +L K C
Sbjct: 220 LAFVLAKDC 228


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
 Frame = +3

Query: 228  QREKYGKHPNHMVENGSKSTNPPMTDEERDNLIKELMSK------NRNRQLETLVREMKN 389
            +RE   +  +   +NG+ + NP +++    N+ +E  S+      N N++ E    + KN
Sbjct: 1462 RREHESQKSDRWRQNGNVNRNPRVSNNNSTNVSRERSSEANHRTSNDNKRDEVTEGKDKN 1521

Query: 390  KRQFMNEET 416
            KRQ ++ E+
Sbjct: 1522 KRQDISGES 1530


>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 641 SGKK-LLYPSYFL*TVGSILINRVLSFLGSSELWLNNEEIPHFFDKIRIYIC 489
           +GKK LL        +G I+    L   G  +++  NE IP+  +K  IY+C
Sbjct: 21  TGKKSLLLERDLSGILGQIVTTNTLQEHGIPQVYWFNENIPNDIEKKTIYLC 72


>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 327 KELMSKNRNRQLETLVREMKNKRQFMNEETLKKLFKHYSLDG 452
           +++ +KN ++ L+TL+++ KN  Q   E   K + +   L G
Sbjct: 207 RKVEAKNEDKDLQTLIQKWKNAAQQAAEVLFKPMAERIRLAG 248


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/85 (21%), Positives = 38/85 (44%)
 Frame = +3

Query: 228 QREKYGKHPNHMVENGSKSTNPPMTDEERDNLIKELMSKNRNRQLETLVREMKNKRQFMN 407
           +REK  KH +        ST   +  ++ + + K+   +++ +  E+  ++ K+      
Sbjct: 164 KREKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKE 223

Query: 408 EETLKKLFKHYSLDGKPEMIIILQK 482
           E+  KK+     L  KPE    ++K
Sbjct: 224 EKKKKKI----KLKDKPESTSSVEK 244


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +3

Query: 255 NHMVENGSKSTNPPMTDEERDNLIKELMSKNRNRQLETLVREMKNKRQFMNEE 413
           N  +E+ ++ +NP   +   +NL+ +L         +  + E++ K +  NEE
Sbjct: 44  NEKIEDINERSNPQWDNAGLENLLNQLQDSVEQSASDDFMGELEKKIEVENEE 96


>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 234 EKYGKHPNHMVENGSKSTNPPMTDEERDNLIKELMSKNRNRQ 359
           +KYGK  NH+++   K+T      EER    +E  +K   R+
Sbjct: 309 KKYGKGANHLIK---KATEERSIREERQRKYEERQAKRAARE 347


>SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 227

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 395 TVHE*GNSKKVVQAL*FRWETRDDNNTPEVL 487
           TVH+    KK+   L + WE  + N+ P V+
Sbjct: 160 TVHDPDIQKKIKSILSYLWELSNTNDPPHVI 190


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 255 NHMVENGSKSTNPPMTDEERDNLIKELMSKNRNRQLETLVREMKN 389
           N++ E      NP   +E R  ++KE + K R  ++ +  R   N
Sbjct: 418 NNLYEKARLIANPFSYEEHRQKIVKERLEKQRASKIRSQNRPKVN 462


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +3

Query: 396 QFMNEETLKKLFKHYSLDG-----KPEMIIILQKYCANVDPNLI 512
           QF+N++T   + +    +G     KPE +I L+K C  V  +LI
Sbjct: 218 QFVNDKTAAVIVEPVQGEGGICPAKPEFLIALRKACDKVGASLI 261


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 291 PPMTDEERDNLIKELMSKNRNRQLETLVREMKNKRQFMNEE 413
           PP+  +ERD         NRN   +   + M + R+F  E+
Sbjct: 125 PPLERDERDAAAAHTSKANRNSARQMWAQLMASVRKFKRED 165


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 234 EKYGKHPNHMVENGSKSTNPPMTDEERDNLIKELMSKNRNRQLETLVRE 380
           E YG  P H+ EN  K ++ P   E  D+L    ++  +   LE L  E
Sbjct: 472 EYYGNIPVHIQENAPKDSSIPPLFEFDDDLELSDLTPEQFAYLEMLKAE 520


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = -1

Query: 388 FFISLTRVSNCLFLFFDINSFIKLSRSSSVMGG 290
           FFI   ++ +C++LF+ I++ + +S S  ++GG
Sbjct: 121 FFIRFGKLGHCVYLFYCISTNVLVS-SLLLLGG 152


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 27/95 (28%), Positives = 37/95 (38%)
 Frame = +3

Query: 177 HKC*CR*FIIFTNCAKNQREKYGKHPNHMVENGSKSTNPPMTDEERDNLIKELMSKNRNR 356
           H+  CR +  F N      E +   PN       +   P M     D  + EL+S  R  
Sbjct: 326 HRNLCRYYEDFFNFQTKFLELF---PNEAGRGDERRVIPYMPGPVDD--VNELISSQRAM 380

Query: 357 QLETLVREMKNKRQFMNEETLKKLFKHYSLDGKPE 461
            L+  ++EM      + E  L KLF    LDG  E
Sbjct: 381 DLDVYLKEMCRLPARLLENELVKLF-FLPLDGDVE 414


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -1

Query: 337 INSFIKLSRS-SSVMGGLVDLEPFSTI*FG--CLPYFSLW 227
           I  F+ L+ S SSV+ G+  L+PF  I FG   L ++  W
Sbjct: 13  ITKFLLLTISTSSVVAGVFALKPFFHINFGLHLLSHYQYW 52


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 284 HQSSHDR*RTR*FNKRINVKKQKQTVGNS 370
           HQ+S    R++ F++ +NVKK+ + V +S
Sbjct: 90  HQTSKSVPRSQRFSRELNVKKENKKVFSS 118


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -1

Query: 427 NFFRVSSFMNC-LLFFISLTRVSNCLFL 347
           NFFR ++   C LLF++SL  ++N LFL
Sbjct: 15  NFFRNATLDQCLLLFYLSLFSLTN-LFL 41


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 456 PEMIIILQKYCANVDPNLIKEMW 524
           PE+  +  ++C N +P L +E W
Sbjct: 633 PEVEQVQSRWCCNENPALFRERW 655


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 599 VGSILINRVLSFLGSSELWLNNEEIPHFFDKIRIYICTILL 477
           +GS LIN V SF    + W N  E P      R+Y+  + +
Sbjct: 359 LGSHLINAVNSFDADDQTWYNMCESPSEKLPRRLYLLLVCI 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,679,728
Number of Sequences: 5004
Number of extensions: 56717
Number of successful extensions: 222
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)