Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1966
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0039 + 17421826-17421966,17422105-17422168,17422562-174226... 33 0.15
01_06_1110 - 34582267-34582468,34582732-34582819,34589337-345894... 33 0.15
07_03_1393 - 26245105-26246862 33 0.20
11_05_0033 + 18500092-18501372,18502419-18502826,18502948-185029... 28 5.6
03_05_0510 + 25039408-25039455,25040627-25040641,25040832-250409... 28 7.4
02_05_0902 + 32620668-32621209,32621847-32622258,32622471-326226... 28 7.4
07_03_0169 + 14670994-14673714,14673799-14673879,14675460-146756... 27 9.7
04_01_0564 - 7222788-7223162,7223258-7223401,7223500-7224501 27 9.7
>05_04_0039 +
17421826-17421966,17422105-17422168,17422562-17422620,
17423410-17423536,17425029-17425116,17425196-17425451,
17425565-17425680,17426232-17426328,17426636-17426771,
17426892-17426979,17427133-17427367
Length = 468
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +3
Query: 231 REKYGKHPNHMVENGSKSTNPPMTDEERDNLIKELMS 341
REKYG P ++ ENGS S++ + D ER N + + ++
Sbjct: 348 REKYGNLPIYIQENGSGSSSETLDDVERINYLAKYIA 384
>01_06_1110 -
34582267-34582468,34582732-34582819,34589337-34589439,
34589886-34589914,34590114-34590144,34590621-34590822,
34591424-34591539,34591784-34592006,34592151-34592238,
34592336-34592407,34592485-34592560,34593822-34593880,
34595341-34595404,34595487-34595618
Length = 494
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 231 REKYGKHPNHMVENGSKSTNPPMTDEERDNLIK 329
RE YG P ++ ENG STN + D +R + IK
Sbjct: 385 RESYGDFPFYIEENGKGSTNDSLDDPDRVDYIK 417
>07_03_1393 - 26245105-26246862
Length = 585
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -3
Query: 647 YKSGKKLLYPSYFL*TVGSILINRVLSFLGSS--ELWL-NNEEIPHFFDKIRIYICTILL 477
+K+ K +YP+ T L+++V + L++ NE ++FDK+R Y LL
Sbjct: 459 WKAQNKQMYPNLDADTSPEALVDKVPKLIKQPMRNLYIATNEPFYNYFDKLRSYFHVHLL 518
Query: 476 EYYYHLW 456
+ Y LW
Sbjct: 519 DDYKELW 525
>11_05_0033 + 18500092-18501372,18502419-18502826,18502948-18502990,
18503236-18503282,18504582-18505901
Length = 1032
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = -1
Query: 433 LNNFFRVSSFMNCLLFFISLTRVSNCLFLFFDINSFIKLSRSSSVMGGLVDLEPF 269
+ NF V F+ CL+ ++LT SN +FF + L++ S ++ G D + +
Sbjct: 857 IGNFSTVLCFIICLILNVTLTGGSN-RAIFFLAPILLLLNQDSDIIAGFGDRQRY 910
>03_05_0510 +
25039408-25039455,25040627-25040641,25040832-25040991,
25041116-25041192,25041324-25042528,25042537-25042621,
25043068-25043130,25043207-25043263,25043299-25043361,
25043560-25043643,25043730-25044320,25044535-25044663
Length = 858
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 533 EEIPHFFDKIRIYICTILLEYYYHL 459
+++ H D +R+Y CT + + Y HL
Sbjct: 552 QQMIHVSDHVRLYACTYIKDMYEHL 576
>02_05_0902 +
32620668-32621209,32621847-32622258,32622471-32622675,
32622712-32622806,32622945-32623557,32623652-32623820,
32624392-32624749,32625226-32625336,32626207-32626561,
32627262-32627484,32627837-32628058,32628628-32628781
Length = 1152
Score = 27.9 bits (59), Expect = 7.4
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +3
Query: 282 STNPPMTDEERDNLIKELMSKNRNRQLETL-VREMKNK---RQFMNEETLKKLFKHYSLD 449
S +PP +DEER + K+ + R R+ E E K R + ET KL K Y D
Sbjct: 109 SPSPPASDEERRDRRKDRKRRKRRREKERYNSAEASRKPGVRAWAGSET--KLAKDYYFD 166
Query: 450 GK 455
K
Sbjct: 167 AK 168
>07_03_0169 +
14670994-14673714,14673799-14673879,14675460-14675612,
14675910-14676073,14676162-14676309,14676426-14676548,
14676754-14676841,14677493-14677674
Length = 1219
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 61 KRIKMNSMRIPLRKHPLNYLKAIHNV 138
K K S+R+PL+K+ L+Y +++ N+
Sbjct: 443 KEEKQPSVRVPLQKNDLDYFQSLENM 468
>04_01_0564 - 7222788-7223162,7223258-7223401,7223500-7224501
Length = 506
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 430 NNFFRVSSFMNCLLFFISLTRVSNCLFLFFDINSFIKLSRSSS 302
++F S +N L FF TRV + + FD SF + S
Sbjct: 417 HDFHGTRSEVNFLKFFFETTRVLKIVVILFDTGSFSSMDEVRS 459
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,028,809
Number of Sequences: 37544
Number of extensions: 276927
Number of successful extensions: 768
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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