Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1966
         (649 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT021467-1|AAX33615.1|  270|Drosophila melanogaster AT12221p pro...    34   0.14 
AE014134-91|ABC65866.1|  239|Drosophila melanogaster CG33992-PA ...    34   0.14 
AY071330-1|AAL48952.1|  435|Drosophila melanogaster RE34993p pro...    29   5.4  
AE013599-617|AAF59113.1|  435|Drosophila melanogaster CG8704-PA ...    29   5.4  
DQ138932-1|ABA86538.1| 1387|Drosophila melanogaster CG12105 prot...    28   9.5  

>BT021467-1|AAX33615.1|  270|Drosophila melanogaster AT12221p
           protein.
          Length = 270

 Score = 34.3 bits (75), Expect = 0.14
 Identities = 18/48 (37%), Positives = 29/48 (60%)
 Frame = +3

Query: 306 EERDNLIKELMSKNRNRQLETLVREMKNKRQFMNEETLKKLFKHYSLD 449
           EE   LIKE+  ++R RQ+   +R+M++ RQ+M  + LK    H+  D
Sbjct: 159 EEDTPLIKEMRRRDRERQVRDYLRQMRH-RQYMECKDLKYPSPHHKCD 205


>AE014134-91|ABC65866.1|  239|Drosophila melanogaster CG33992-PA
           protein.
          Length = 239

 Score = 34.3 bits (75), Expect = 0.14
 Identities = 18/48 (37%), Positives = 29/48 (60%)
 Frame = +3

Query: 306 EERDNLIKELMSKNRNRQLETLVREMKNKRQFMNEETLKKLFKHYSLD 449
           EE   LIKE+  ++R RQ+   +R+M++ RQ+M  + LK    H+  D
Sbjct: 128 EEDTPLIKEMRRRDRERQVRDYLRQMRH-RQYMECKDLKYPSPHHKCD 174


>AY071330-1|AAL48952.1|  435|Drosophila melanogaster RE34993p
           protein.
          Length = 435

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 19/113 (16%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
 Frame = +3

Query: 213 NCAKNQREKYGKH-----PNHMVENGSKSTNPPMTDEERDNLIKELMSKNRNRQLETLVR 377
           +C+    + YG +     PN + +   + TN P+ ++ R   I   +++ ++  LE + +
Sbjct: 14  DCSNGYSDSYGSNGRMSNPNGLSKAELRKTNKPIMEKRRRARINHCLNELKSLILEAMKK 73

Query: 378 EMKNKRQFMNEETLKKLFKHYSLDGKPEMIIILQKYCANVDPNLIKEMWNFFI 536
           +     +    + L+   KH     + ++ + +Q      DP+++++    F+
Sbjct: 74  DPARHTKLEKADILEMTVKHLQSVQRQQLNMAIQS-----DPSVVQKFKTGFV 121


>AE013599-617|AAF59113.1|  435|Drosophila melanogaster CG8704-PA
           protein.
          Length = 435

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 19/113 (16%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
 Frame = +3

Query: 213 NCAKNQREKYGKH-----PNHMVENGSKSTNPPMTDEERDNLIKELMSKNRNRQLETLVR 377
           +C+    + YG +     PN + +   + TN P+ ++ R   I   +++ ++  LE + +
Sbjct: 14  DCSNGYSDSYGSNGRMSNPNGLSKAELRKTNKPIMEKRRRARINHCLNELKSLILEAMKK 73

Query: 378 EMKNKRQFMNEETLKKLFKHYSLDGKPEMIIILQKYCANVDPNLIKEMWNFFI 536
           +     +    + L+   KH     + ++ + +Q      DP+++++    F+
Sbjct: 74  DPARHTKLEKADILEMTVKHLQSVQRQQLNMAIQS-----DPSVVQKFKTGFV 121


>DQ138932-1|ABA86538.1| 1387|Drosophila melanogaster CG12105 protein.
          Length = 1387

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
 Frame = +3

Query: 213  NCAKNQREKYGKHPNHMVENGSKSTNPPMTDEERDN----LIKELMSKNRNRQLETLVRE 380
            + AKNQ     K P H+ +   K++    T+++  N    L   L  +N+  +L + + +
Sbjct: 1132 DAAKNQESLVKKKPTHLKKLVRKNSIDKETEKQEKNDSSKLSNILRDRNKINELSSRINK 1191

Query: 381  M-KNKRQFMNEETLKKLFKHYSLDGKPE 461
            +   K+Q   +E  KK         KPE
Sbjct: 1192 LTPPKKQAKPKEEAKKAVTANEDSAKPE 1219


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,648,958
Number of Sequences: 53049
Number of extensions: 523048
Number of successful extensions: 1666
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1666
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)