Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1966
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75538-1|CAA99839.2| 1615|Caenorhabditis elegans Hypothetical pr...    32   0.30 
Z47356-2|CAA87415.1|  252|Caenorhabditis elegans Hypothetical pr...    31   0.53 
AM748824-1|CAO72178.1|  512|Caenorhabditis elegans hexosaminidas...    31   0.93 
AL033513-1|CAA22078.2|  512|Caenorhabditis elegans Hypothetical ...    31   0.93 
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U80452-9|AAB37854.2|  179|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U41019-4|AAA82330.1|  113|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot...    29   2.8  
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF022971-1|AAG23975.1|  380|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z74030-18|CAA98448.1|  494|Caenorhabditis elegans Hypothetical p...    28   6.6  
Z73970-6|CAA98247.1|  494|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical p...    27   8.7  
Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z75538-1|CAA99839.2| 1615|Caenorhabditis elegans Hypothetical
           protein F20G4.1 protein.
          Length = 1615

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -1

Query: 358 CLFLFFDINSFIKLSRSSSVMGGLVDLEPFSTI*FGCLPYFSLWFFAQFV 209
           C F   D++ F++  R S+  GG     PFST     LP  SL F +Q +
Sbjct: 239 CSFRMMDMDPFVEPIRISTPDGGFFSRLPFSTSFMSYLPRMSLSFDSQLL 288


>Z47356-2|CAA87415.1|  252|Caenorhabditis elegans Hypothetical
           protein T15H9.2 protein.
          Length = 252

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +3

Query: 306 EERDNLIKELMS-KNRNRQLETLVREMKNKRQFMNEETLKKLFKHYSLD 449
           +  + + KEL++ +NR R+L     +M  +++ +  E L+ LFK +SL+
Sbjct: 190 KRNEEMQKELIAERNRQRKLHDATMKMMEEKERVRVEQLEDLFKDFSLE 238


>AM748824-1|CAO72178.1|  512|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 512

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 423 KLFKHYSLDGKPEMIIILQKYCANVDPNLIKEMW 524
           +L K Y+LD    +I ++ KY AN+D +L  EMW
Sbjct: 235 ELIKEYNLDNL--VIPVVWKYTANLDNDLPSEMW 266


>AL033513-1|CAA22078.2|  512|Caenorhabditis elegans Hypothetical
           protein Y70D2A.2 protein.
          Length = 512

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 423 KLFKHYSLDGKPEMIIILQKYCANVDPNLIKEMW 524
           +L K Y+LD    +I ++ KY AN+D +L  EMW
Sbjct: 235 ELIKEYNLDNL--VIPVVWKYTANLDNDLPSEMW 266


>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical
           protein T06E4.3b protein.
          Length = 2514

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
 Frame = +3

Query: 213 NCAKNQREKYGKHPNHMVENGSKSTNPPMTDEERDNLIKELMSKNRNRQL-----ETLVR 377
           NCA    +K GK+ N + E      +   TD   ++    ++    N QL       L+ 
Sbjct: 525 NCALQLEKKTGKYINLVAEMSLAVFSKSQTDRIANSFEPLILFLTDNLQLINDFITILIA 584

Query: 378 EMKNKRQFMNEETLKKLFK 434
           ++  K++F +E T+ K FK
Sbjct: 585 KLCEKQEFYSELTILKYFK 603


>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical
           protein T06E4.3a protein.
          Length = 2531

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
 Frame = +3

Query: 213 NCAKNQREKYGKHPNHMVENGSKSTNPPMTDEERDNLIKELMSKNRNRQL-----ETLVR 377
           NCA    +K GK+ N + E      +   TD   ++    ++    N QL       L+ 
Sbjct: 525 NCALQLEKKTGKYINLVAEMSLAVFSKSQTDRIANSFEPLILFLTDNLQLINDFITILIA 584

Query: 378 EMKNKRQFMNEETLKKLFK 434
           ++  K++F +E T+ K FK
Sbjct: 585 KLCEKQEFYSELTILKYFK 603


>U80452-9|AAB37854.2|  179|Caenorhabditis elegans Hypothetical
           protein C16C8.12 protein.
          Length = 179

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 258 HMVENGSKSTNPPMTDEERDNLIKELMSKNRNRQLETLVREMKNKRQFM 404
           H+ E+     N    + +    I +L++KN ++ LETL++  K + Q M
Sbjct: 60  HVQESLMSELNSVKNELKHAKSINDLIAKNADKNLETLLKIQKTQDQIM 108


>U41019-4|AAA82330.1|  113|Caenorhabditis elegans Hypothetical
           protein C04E7.1 protein.
          Length = 113

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 502 LILSKKCGISSLFSQSSLLPRKLRTRF-INI-DPTVYRKYEGYRSFL 636
           +IL +    + L     L+ RK+R +  +N  DP + RK E YRSFL
Sbjct: 1   MILLRDSERADLEQMHGLIKRKIRYQVSLNSHDPAINRKLEAYRSFL 47


>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
           protein.
          Length = 2514

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
 Frame = +3

Query: 213 NCAKNQREKYGKHPNHMVENGSKSTNPPMTDEERDNLIKELMSKNRNRQL-----ETLVR 377
           NCA    +K GK+ N + E      +   TD   ++    ++    N QL       L+ 
Sbjct: 525 NCALQLEKKTGKYINLVAEMSLAVFSKSQTDRIANSFEPLILFLTDNLQLINDFITILIA 584

Query: 378 EMKNKRQFMNEETLKKLFK 434
           ++  K++F +E T+ K FK
Sbjct: 585 KLCEKQEFYSELTILKYFK 603


>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
           protein C18C4.5b protein.
          Length = 1046

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +3

Query: 234 EKYGKHPNHMVENGSKSTNPPMTDEERDNLIKELMSKNRNRQLETLVREMKNKRQFMNEE 413
           E+Y +  NH V+N S S +  +T  E +    E   +  +++ +  +RE     + M  E
Sbjct: 516 EEYIEKENHRVQNASSSHDADITRLENEKTQMEEALEKADQEKDQAIREASESVRVMKRE 575


>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
           protein C18C4.5a protein.
          Length = 1022

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +3

Query: 234 EKYGKHPNHMVENGSKSTNPPMTDEERDNLIKELMSKNRNRQLETLVREMKNKRQFMNEE 413
           E+Y +  NH V+N S S +  +T  E +    E   +  +++ +  +RE     + M  E
Sbjct: 516 EEYIEKENHRVQNASSSHDADITRLENEKTQMEEALEKADQEKDQAIREASESVRVMKRE 575


>AF022971-1|AAG23975.1|  380|Caenorhabditis elegans Hypothetical
           protein C31B8.4 protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
 Frame = +3

Query: 213 NCAKNQREKYGKHPNHM--VENGSKSTNPPMTD--EERDNLIKELMSKNRNRQLETLVRE 380
           N  + Q +  G H N +  +E   + +N  + D     D  +     +N +RQ+  L+ +
Sbjct: 6   NLREQQDKCRGDHENRLREMETEREKSNQGIADAASAADGRLNAARQEN-DRQIRELMAK 64

Query: 381 MKNKRQFMNEETLKKLFKH 437
           + N+ +  ++E  +K F+H
Sbjct: 65  VDNENEMHSDEISRKCFEH 83


>Z74030-18|CAA98448.1|  494|Caenorhabditis elegans Hypothetical
           protein D1054.15 protein.
          Length = 494

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 291 PPMTDEERDNLIKELMSKNRNRQLETLVREMKNKRQ 398
           PP   EE D+LI+ +  K+    +   V EMK +R+
Sbjct: 54  PPPMPEENDSLIRSMKRKHEYGNVIKKVEEMKVRRE 89


>Z73970-6|CAA98247.1|  494|Caenorhabditis elegans Hypothetical
           protein D1054.15 protein.
          Length = 494

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 291 PPMTDEERDNLIKELMSKNRNRQLETLVREMKNKRQ 398
           PP   EE D+LI+ +  K+    +   V EMK +R+
Sbjct: 54  PPPMPEENDSLIRSMKRKHEYGNVIKKVEEMKVRRE 89


>Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical
           protein F36G9.12 protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/66 (22%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
 Frame = -1

Query: 499 STFAQYFWSIIIISGFPSKL*CLNNFFRVSSFMNCLLFFISLTRVSN----CLFLFFDIN 332
           +TF ++FW+ ++++ F S    ++ FF +S  +   LFF +  + S       ++ F ++
Sbjct: 303 TTFTKHFWNHLLLNAFVS----VDTFFLLSGIVVSYLFFKNRMKSSQIKSPLTWILFYVH 358

Query: 331 SFIKLS 314
            +++L+
Sbjct: 359 RYLRLT 364


>Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical
           protein T06D8.8 protein.
          Length = 387

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 282 STNPPMTDEERDNLIKELMSKNRNRQLETLVREMKNKRQFMNEETLKKLFK 434
           + N P+ D+ ++  +KEL  K    QL  L R +  K QF+    + + ++
Sbjct: 13  AANGPLADDWKN--LKELWEKKLWHQLTVLTRSLVKKPQFVASTDMHEFYR 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,465,128
Number of Sequences: 27780
Number of extensions: 302741
Number of successful extensions: 1149
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)