Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1966
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    26   0.36 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   0.63 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   0.83 
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   3.4  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   4.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.9  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   5.9  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   7.8  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   7.8  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 91  PLRKHPLNYLKAIHNVLKIQ 150
           P +K+P    KA+HNV+ IQ
Sbjct: 443 PRKKYPFELEKALHNVMFIQ 462


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 596 GSILINRVLSFLGSSELWLNNEEIPHFFDKIR 501
           G++    +L F+G   L L N ++ HF  KI+
Sbjct: 241 GNVFAGYLLVFIGLQSLSLTNIQLEHFEMKIK 272


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 12/58 (20%), Positives = 25/58 (43%)
 Frame = +3

Query: 222 KNQREKYGKHPNHMVENGSKSTNPPMTDEERDNLIKELMSKNRNRQLETLVREMKNKR 395
           +N  ++ G   N   +NG++       D +++   +    +N NRQ +    +  N R
Sbjct: 475 QNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNR 532


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/68 (19%), Positives = 26/68 (38%)
 Frame = +3

Query: 300 TDEERDNLIKELMSKNRNRQLETLVREMKNKRQFMNEETLKKLFKHYSLDGKPEMIIILQ 479
           T +ER    +E       + + +L         + N    KKL+ + +   +  + + + 
Sbjct: 284 TSKERSRDRRERERSKEPKIISSLSNSCNYSNNYYNNNNYKKLYYNINYIEQIPIPVPVP 343

Query: 480 KYCANVDP 503
            YC N  P
Sbjct: 344 IYCGNFPP 351


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/42 (21%), Positives = 23/42 (54%)
 Frame = -1

Query: 427 NFFRVSSFMNCLLFFISLTRVSNCLFLFFDINSFIKLSRSSS 302
           +F+R  +  N L  ++    V++C+F+  +   F+  S++ +
Sbjct: 47  DFYRQDTKNNLLNAYVRFKLVTDCIFVTSEPGYFLYTSKNDN 88


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 453 KPEMIIILQKYCANVDPNLIKEMWNFFII*PKLTASKETQN 575
           +PE +I L ++   + PN I E     ++ PKLT   E  N
Sbjct: 491 QPEPLIELIEHWMPLLPNWILENILDMLVLPKLTLEVEEWN 531


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 46  NRNYNKRIKMNSMRIPLRKHPLNYLKAIHNVLKIQK 153
           N NYN     N+       +  NY K  +N++ I++
Sbjct: 326 NNNYNNNNYNNNYNNYNNNNYNNYKKLYYNIINIEQ 361


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 596 GSILINRVLSFLGSSELWLNN 534
           G+I  N    F+G+S  W NN
Sbjct: 410 GTICENSAWGFVGNSLWWENN 430


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 40  IFNRNYNKRIKMNSMRI 90
           I N NYNK++  N + I
Sbjct: 323 IHNNNYNKKLYYNIINI 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,024
Number of Sequences: 438
Number of extensions: 3729
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)