Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1965X
         (324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    28   0.30 
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   2.8  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   2.8  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   2.8  

>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 28.3 bits (60), Expect = 0.30
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 80  PQQSTLLLRQQELCQRISSPHAAGGPRSRSVVLHPLVVRLCGIQPD 217
           P Q +  L  +++C R+ + H  GG  S   +L+ L  RL    P+
Sbjct: 35  PHQDSKNLLYRQICGRLLAQHVFGGAGSTQPILNQLCKRLSTGNPN 80


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 269 SCARSCPGSRLRTPAYRCQAGY 204
           SCA +C   R+R   Y   +GY
Sbjct: 73  SCAHTCTACRMRIKDYALMSGY 94


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = -1

Query: 186 SGCRTTERDRGP---PAACGLEIL*HSSCCRSNKVLCCGLPQVG 64
           S C  +++D  P   P+ C  E     SCC S K  CC   + G
Sbjct: 223 SSC-CSKKDSSPSEKPSCCSQE---KKSCCSSKKPSCCSQEKKG 262



 Score = 24.6 bits (51), Expect = 3.7
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -1

Query: 198 SRTTSGCRTTERDRGPPAACGLEIL*HSSCCRSNKVLCC 82
           S+   GC +TE+     + C  E     SCC S K  CC
Sbjct: 257 SQEKKGCCSTEKT----SCCSQE---KKSCCTSEKPSCC 288


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -1

Query: 261 SVLSRFSFKDTSL*VSGWIPHSRTTSG 181
           +++   +F+D+ + V+GW+   RT  G
Sbjct: 132 AIIDSTNFRDSRVRVNGWVHRMRTQKG 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,194,519
Number of Sequences: 5004
Number of extensions: 20102
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)