Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1965X
         (324 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0058 - 16915281-16915313,16915424-16915535,16915585-169169...    28   1.9  
02_05_1023 + 33580416-33580904                                         27   2.6  
01_01_0897 + 7070539-7071522,7071949-7072620                           26   5.9  
01_06_1181 - 35169729-35169768,35169927-35169994,35170051-35171265     26   7.8  

>03_04_0058 -
           16915281-16915313,16915424-16915535,16915585-16916990,
           16919112-16919282
          Length = 573

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +2

Query: 74  GNPQQSTLLLRQQELCQRISSPHAAGGPRSRSVVLHPLVVRL 199
           GN Q +  L  Q   CQR+ S  A  G        HP++ RL
Sbjct: 105 GNLQLAWELSSQIRNCQRLLSEEAVSGKAITKEEAHPIITRL 146


>02_05_1023 + 33580416-33580904
          Length = 162

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
 Frame = +1

Query: 139 ACCRWTSIP---LCRSAPTCCTAMRY 207
           A CRW S P    CR    CC A+ +
Sbjct: 119 AACRWRSAPPCGACRDVRACCRAVEW 144


>01_01_0897 + 7070539-7071522,7071949-7072620
          Length = 551

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 123 RESQARMLPVDLDPALSFCTHLLYGYAV 206
           R SQA  LPVD+        HL YG  V
Sbjct: 517 RGSQAWALPVDMSEVNGIAVHLKYGLHV 544


>01_06_1181 - 35169729-35169768,35169927-35169994,35170051-35171265
          Length = 440

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 245 SRLRTPAYRCQAGYRIAVQQ-VGAERQSGI 159
           ++ R P Y+C  G RI  QQ +  E Q+G+
Sbjct: 137 NKWRNPMYQCYVGSRIQEQQKLAVELQAGM 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,464,414
Number of Sequences: 37544
Number of extensions: 156674
Number of successful extensions: 436
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)