Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1965X
         (324 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58746-4|AAB00624.1|  751|Caenorhabditis elegans Phospholipase c...    28   1.8  
AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical ...    28   1.8  
Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical pr...    27   4.1  
U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical pr...    26   5.4  
U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical pr...    26   5.4  
Z81099-1|CAB03187.1|  600|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z34533-5|CAA84298.1|  781|Caenorhabditis elegans Hypothetical pr...    26   7.2  
AL132862-3|CAB70225.1|  294|Caenorhabditis elegans Hypothetical ...    26   7.2  
AF003132-2|AAB54134.2|  568|Caenorhabditis elegans Hypothetical ...    26   7.2  
Z82052-5|CAB04828.1|  382|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z70311-10|CAA94377.3|  602|Caenorhabditis elegans Hypothetical p...    25   9.5  

>U58746-4|AAB00624.1|  751|Caenorhabditis elegans Phospholipase c
           protein 4 protein.
          Length = 751

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 152 GPRSRSVVLHPLVVRLCGIQPDTYKLVSLNENLD 253
           G R  S  +HP+V  LCGIQ       +  E LD
Sbjct: 554 GLRQDSSNMHPMVSWLCGIQSVAMNFQTAGEELD 587


>AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical
           protein W08E12.2 protein.
          Length = 120

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 120 HSSCCRSNKVLCCG 79
           +SSCC SN   CCG
Sbjct: 88  YSSCCNSNNFSCCG 101


>Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical
           protein F59F3.5 protein.
          Length = 1199

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 182 GAERQSGIEVHRQHAGLRFSDIAPAVVVTKYFAVGYRR 69
           G   QS  E+ ++ +GLRF D +   +V K   + Y R
Sbjct: 263 GYNNQSAHEIEKRSSGLRFGDPSSQDIVEKNTMLRYDR 300


>U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical
           protein T19D12.4b protein.
          Length = 1015

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 86  QSTLLLRQQELCQRISSPHAAGGPRSRSVVLHPLVVRLCGIQPDTYKLVSL--NENLDKT 259
           ++T + R+Q+      S      P + +    P+V R C   P T  +V +   ++L+K 
Sbjct: 124 KATAVCRRQQTFASTVSAAPTNPPTTVTTAAPPVVARYCKSNPITRDIVLVVDMDDLEKN 183

Query: 260 EHT 268
            HT
Sbjct: 184 NHT 186


>U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical
           protein T19D12.4a protein.
          Length = 1028

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 86  QSTLLLRQQELCQRISSPHAAGGPRSRSVVLHPLVVRLCGIQPDTYKLVSL--NENLDKT 259
           ++T + R+Q+      S      P + +    P+V R C   P T  +V +   ++L+K 
Sbjct: 137 KATAVCRRQQTFASTVSAAPTNPPTTVTTAAPPVVARYCKSNPITRDIVLVVDMDDLEKN 196

Query: 260 EHT 268
            HT
Sbjct: 197 NHT 199


>Z81099-1|CAB03187.1|  600|Caenorhabditis elegans Hypothetical
           protein K08F9.2 protein.
          Length = 600

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
 Frame = -1

Query: 213 GWIPHSRTTSGCRTTERDRGPPAACGLEI---L*HSSCCRSNKVLCCGLPQVGP 61
           GW    + T G   T+  + P   CGLE+   L   +C +   VL  G P   P
Sbjct: 381 GWDDQLKITDGSGDTKSFKLPSQPCGLEVSDDLAIVACYKHVVVLSRGTPTENP 434


>Z34533-5|CAA84298.1|  781|Caenorhabditis elegans Hypothetical
           protein B0285.7 protein.
          Length = 781

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 100 TTTAGAMSENLKPACCRWTSIPLCRSAPT 186
           TTT+GA  E++K +    ++IP   + PT
Sbjct: 91  TTTSGAFDESVKNSEASTSTIPTTEAVPT 119


>AL132862-3|CAB70225.1|  294|Caenorhabditis elegans Hypothetical
           protein Y73F8A.6 protein.
          Length = 294

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 241 REPGQDRAHXNYRAIT-SLKAKYPGL 315
           R+P ++RA  NY A+   LK K+ GL
Sbjct: 221 RDPVRERAQANYAAVVDELKNKFKGL 246


>AF003132-2|AAB54134.2|  568|Caenorhabditis elegans Hypothetical
           protein F37E3.2 protein.
          Length = 568

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 117 YVRESQARMLPVDLDPALSFCTHLLYGYAVSSLTPIS 227
           ++  S    LP  L  + S  T  L G ++SSLTP++
Sbjct: 177 HIENSSITELPKWLSTSKSLSTVYLKGTSISSLTPVA 213


>Z82052-5|CAB04828.1|  382|Caenorhabditis elegans Hypothetical
           protein T25E12.10 protein.
          Length = 382

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 78  THSKVLCYYDSRSYVRESQARMLPVDLD 161
           T+S +L +YD+RS V  + AR  P D D
Sbjct: 335 TYSNLLYFYDTRSCVLMTVARGGPYDGD 362


>Z70311-10|CAA94377.3|  602|Caenorhabditis elegans Hypothetical
           protein T25B9.6 protein.
          Length = 602

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = +2

Query: 128 ISSPHAAGGPRSRSVVLHPLVVRLC--GIQPDTYKL--VSLNENLDKTEHTXTTVRS 286
           I  P  AG PR+  +     VVR C      DT+    VSLNE +D   HT   V S
Sbjct: 494 IGEPIVAGLPRT-PIDNETEVVRSCTQSDSADTFNFSSVSLNEMVDDALHTAKGVES 549


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,887,631
Number of Sequences: 27780
Number of extensions: 125421
Number of successful extensions: 366
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)