Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1964
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 31 0.15
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 28 1.4
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 27 1.8
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 4.2
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 26 5.6
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 25 7.4
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 25 7.4
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 25 7.4
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 7.4
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 25 9.7
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 25 9.7
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 25 9.7
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 31.1 bits (67), Expect = 0.15
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Frame = +1
Query: 340 KPSLPAVSNT--RKINLQSTEQKTPNTIPVFGIDRKIVKLKDGMLTRRNRVERALPKINP 513
K P V+ T R++NL S E+K+ + + I +L D +L ++ +P +P
Sbjct: 289 KKQAPLVTGTTARELNLSSEEKKS------YLLSLPISQLVD-ILLFCEQLHPDIPFYSP 341
Query: 514 KRSMFVLQQLSRRHRNSHQCN*SXLGETYHSLNKLNDDQVKMGK 645
K S V + S+R + N G+ Y SLN + Q K K
Sbjct: 342 KTSTIVQELQSKRSAFTATMNEPVTGDQYLSLNNGTESQSKTTK 385
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/63 (26%), Positives = 35/63 (55%)
Frame = +2
Query: 32 PEATIVDSSQLTPVYLINPNDSQANYIITLGDVEQKPISDNLKSFYEKSGSIENSIPNVI 211
PEA +D++ +T V I+ ++ + ++ L Q+ I + + YE+S + +SIP ++
Sbjct: 698 PEADYLDAALMT-VMQIHLSEGPGDILVFL--TGQEEIDTSCEILYERSKMLGDSIPELV 754
Query: 212 KAP 220
P
Sbjct: 755 ILP 757
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 303 TKQTLCIEQCYIETELTCSFEYS*NKSTVYRTEDTKYH 416
TKQ + + + TC ++Y ++ V+ TED K++
Sbjct: 396 TKQISEVLNTFDQAAFTCEYKYDGERAQVHFTEDGKFY 433
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 616 TYLGYGKFLLIXINCTDVSFDVGGIIVEVQTYFS 515
T GYG+ ++I N + S + GI+ V FS
Sbjct: 346 TKSGYGRKVVISTNIAETSLTIDGIVYVVDPGFS 379
>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
Str2 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = -2
Query: 470 VNMPSFNFTIFLSMPKTGMVFGVFCSVDCRFILRVFETAGKLGFNITLFNT*GLLGSVFG 291
+N + + L + GM G+ ++ + ++ + KLG N+TL+ T +G FG
Sbjct: 439 INDNHYTRPLVLVLILAGMGGGLL-TLSAQIAVQSVSSHAKLGMNLTLYLTFSSVGGAFG 497
Query: 290 N 288
+
Sbjct: 498 S 498
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/47 (21%), Positives = 25/47 (53%)
Frame = +3
Query: 321 IEQCYIETELTCSFEYS*NKSTVYRTEDTKYHTSLWHRQEDCKVKRW 461
+ + Y+E+ + S+ Y + ST+ + + + S W R+ K++ +
Sbjct: 783 LREAYVESAMDESYMYLASNSTIEKRDLAEIEKSQWGRKCSHKIREY 829
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +2
Query: 107 YIITLGDVEQKPISDNLKSFYEKSGSIENSIPNVIKAPAPRTIKKI 244
+I G E++ + L + YE+ + E +K PRT+ ++
Sbjct: 349 FITEEGSCEKEAMKTRLNAIYEEEPTTEEYEEEFLKTYVPRTLDEV 394
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 25.4 bits (53), Expect = 7.4
Identities = 17/81 (20%), Positives = 34/81 (41%)
Frame = +1
Query: 172 KERQYRKLNTKCNKGPRASYHQKD*SSSVGNNLKLASFLLPKTEPSKPYVLNNVILKPSL 351
+++ Y + ++ P+ +H + SS +N S +L ++ P + NN S
Sbjct: 385 QDKAYGGVVQSNSRQPKVGFHVNNSSSGHNDNEGNHSLIL-SSKTKSPQLFNNEKKDESY 443
Query: 352 PAVSNTRKINLQSTEQKTPNT 414
SNT ++ T + T
Sbjct: 444 SGFSNTNSYAIEETSRALMGT 464
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.4 bits (53), Expect = 7.4
Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
Frame = +1
Query: 169 RKERQYRKLNTKCNKGPRASYHQKD*SSSVGNNLKLASFLLPKTEPSKPYVLNNVILKPS 348
R ER R L K + +++ + FL+ +TE +V + +
Sbjct: 695 RNERVERDLRKKAEREALDRAKKEEELRESRRQARKLDFLITQTELYSHFVGRKMDREQD 754
Query: 349 LPAVSNT---RKINLQSTEQKTPNTIPVFGIDRKIVKLKD 459
LP+ +NT +IN S E++ + V + K ++
Sbjct: 755 LPSATNTASVSEINFDSDEEEDIRRLAVESAQEAVQKARE 794
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 412 TIPVFGIDRKIVKLKDGMLTRRNRVERALPKINP 513
T+P FGID I+ G + N VE L +P
Sbjct: 446 TLPFFGIDAVIIDPLTGKIIEGNDVEGVLAIRSP 479
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 25.0 bits (52), Expect = 9.7
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Frame = -1
Query: 357 CR*ARFQYNIVQYIRFAWFSFW----QQKAG*FQIIPDAAGSIFLMVRGAGAFITFGIEF 190
C +R + ++VQ F WFSF+ K F I + +V F+ GIE+
Sbjct: 234 CICSRTKLHLVQVCLFCWFSFFILNHPVKQRIFSIDNPDEYLVPFVVSCFTYFLGDGIEY 293
Query: 189 SILPLFS*KLFRLSEIGFCS---TSPKVII*FA*LSFG 85
++ LF + +GF + TS K+++ F+ L+ G
Sbjct: 294 ALYSLF----ITTTVLGFGTIRRTSKKMVLFFSLLTCG 327
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = +1
Query: 334 ILKPSLPAVSNTRKINLQSTEQKTPNTIPV 423
+L+P++ V + K+N++ +Q P T+ +
Sbjct: 912 VLEPNVEYVEDEYKLNIEIRDQPKPQTVQI 941
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,853,617
Number of Sequences: 5004
Number of extensions: 63221
Number of successful extensions: 178
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -