Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1964
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0093 - 9108883-9109068,9109156-9109248,9109363-9109441,910...    29   3.3  
05_03_0460 - 14294931-14295110,14295200-14295234,14295358-142954...    29   3.3  
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648...    29   4.4  

>10_05_0093 -
           9108883-9109068,9109156-9109248,9109363-9109441,
           9109529-9109639,9109715-9109857,9110050-9110522,
           9110568-9111075,9111241-9111810,9111883-9112119,
           9112196-9112465
          Length = 889

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 529 VLQQLSRRHRNSHQCN*SXLGETYHSLNKLNDDQVKMGKPMPLEN 663
           V+  L++R++  H+             NK  ++  +MG P+P+EN
Sbjct: 246 VMSDLAKRNKWHHRLGSGGYAPKIEQWNKEEEEMKRMGVPVPMEN 290


>05_03_0460 - 14294931-14295110,14295200-14295234,14295358-14295457,
            14295548-14295669,14296272-14296367,14296489-14298949
          Length = 997

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -3

Query: 472  GSTCHLLT-LQSSCLCQRLVW 413
            G  CHL+T ++S CLCQ L W
Sbjct: 969  GIKCHLVTAMKSQCLCQILWW 989


>03_06_0030 +
           31161821-31161927,31163700-31163934,31164064-31164826,
           31165816-31167650,31169294-31169424,31169993-31170075,
           31170426-31170680,31171125-31171220,31171695-31171775,
           31171811-31171968,31172434-31172534,31172614-31172629,
           31173390-31173439,31174558-31174588,31175156-31175305,
           31176135-31176173,31176288-31176410,31176496-31176552,
           31176837-31176911,31177003-31177107
          Length = 1496

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +2

Query: 5   FTKSTMNTLPEATIVDSS-QLTPVYLINPNDSQANYIITLGDVEQKPISDNLKSFYEKSG 181
           F  +      E  ++D   Q++ +++  P  S AN  +++  V+ +  S+N      ++G
Sbjct: 352 FAANAKTKQEEKQLIDKGKQVSSIHVFTPRYSDANPQMSMKGVDGRSASNNQFFHQGQNG 411

Query: 182 SIENSIPNVIKAPAPRTIKKID 247
           SI     + ++APA     ++D
Sbjct: 412 SIGWFARSPLEAPAINNFPRLD 433


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,141,576
Number of Sequences: 37544
Number of extensions: 349399
Number of successful extensions: 824
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)