Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1964
(663 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY684169-1|AAT74627.1| 3052|Homo sapiens REV3-like, catalytic su... 32 2.1
AL512325-1|CAI20998.1| 3130|Homo sapiens REV3-like, catalytic su... 32 2.1
AL136310-2|CAI20509.1| 3130|Homo sapiens REV3-like, catalytic su... 32 2.1
AL080317-2|CAI19192.1| 3130|Homo sapiens REV3-like, catalytic su... 32 2.1
AF179429-1|AAG09403.1| 3052|Homo sapiens DNA polymerase zeta cat... 32 2.1
AF179428-1|AAG09402.1| 3052|Homo sapiens DNA polymerase zeta cat... 32 2.1
AF157476-1|AAD40184.1| 3130|Homo sapiens DNA polymerase zeta cat... 32 2.1
AF071798-1|AAC24009.1| 3130|Homo sapiens DNA polymerase zeta cat... 32 2.1
AF058701-1|AAC24357.1| 3130|Homo sapiens DNA polymerase zeta cat... 32 2.1
BC045814-1|AAH45814.1| 497|Homo sapiens ZNF20 protein protein. 31 2.8
BC036714-1|AAH36714.3| 532|Homo sapiens zinc finger protein 20 ... 31 2.8
AF078695-1|AAC28460.1| 3052|Homo sapiens DNA polymerase zeta cat... 31 3.7
AF035537-1|AAB88486.1| 3052|Homo sapiens DNA polymerase zeta pro... 31 3.7
>AY684169-1|AAT74627.1| 3052|Homo sapiens REV3-like, catalytic subunit
of DNA polymerase zeta (yeast) protein.
Length = 3052
Score = 31.9 bits (69), Expect = 2.1
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +1
Query: 160 KFLRKERQYRKLNTKCNKGPRASYHQ--KD*SSSVGNNLKLASFLLPKTEPSKPYVLNNV 333
K L ++RQ + N + P ++ HQ K+ S S+ +N K T P KP +
Sbjct: 1453 KELLQKRQQKAQNANTTQDPLSNKHQPNKNISGSLEHN-KANKRTRSVTSPRKPRTPRST 1511
Query: 334 ILKPSLPAVSNTRKINLQSTEQ 399
K +P + +NLQ++ Q
Sbjct: 1512 KQKEKIPKLLKVDSLNLQNSSQ 1533
>AL512325-1|CAI20998.1| 3130|Homo sapiens REV3-like, catalytic subunit
of DNA polymerase zeta (yeast) protein.
Length = 3130
Score = 31.9 bits (69), Expect = 2.1
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +1
Query: 160 KFLRKERQYRKLNTKCNKGPRASYHQ--KD*SSSVGNNLKLASFLLPKTEPSKPYVLNNV 333
K L ++RQ + N + P ++ HQ K+ S S+ +N K T P KP +
Sbjct: 1531 KELLQKRQQKAQNANTTQDPLSNKHQPNKNISGSLEHN-KANKRTRSVTSPRKPRTPRST 1589
Query: 334 ILKPSLPAVSNTRKINLQSTEQ 399
K +P + +NLQ++ Q
Sbjct: 1590 KQKEKIPKLLKVDSLNLQNSSQ 1611
>AL136310-2|CAI20509.1| 3130|Homo sapiens REV3-like, catalytic subunit
of DNA polymerase zeta (yeast) protein.
Length = 3130
Score = 31.9 bits (69), Expect = 2.1
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +1
Query: 160 KFLRKERQYRKLNTKCNKGPRASYHQ--KD*SSSVGNNLKLASFLLPKTEPSKPYVLNNV 333
K L ++RQ + N + P ++ HQ K+ S S+ +N K T P KP +
Sbjct: 1531 KELLQKRQQKAQNANTTQDPLSNKHQPNKNISGSLEHN-KANKRTRSVTSPRKPRTPRST 1589
Query: 334 ILKPSLPAVSNTRKINLQSTEQ 399
K +P + +NLQ++ Q
Sbjct: 1590 KQKEKIPKLLKVDSLNLQNSSQ 1611
>AL080317-2|CAI19192.1| 3130|Homo sapiens REV3-like, catalytic subunit
of DNA polymerase zeta (yeast) protein.
Length = 3130
Score = 31.9 bits (69), Expect = 2.1
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +1
Query: 160 KFLRKERQYRKLNTKCNKGPRASYHQ--KD*SSSVGNNLKLASFLLPKTEPSKPYVLNNV 333
K L ++RQ + N + P ++ HQ K+ S S+ +N K T P KP +
Sbjct: 1531 KELLQKRQQKAQNANTTQDPLSNKHQPNKNISGSLEHN-KANKRTRSVTSPRKPRTPRST 1589
Query: 334 ILKPSLPAVSNTRKINLQSTEQ 399
K +P + +NLQ++ Q
Sbjct: 1590 KQKEKIPKLLKVDSLNLQNSSQ 1611
>AF179429-1|AAG09403.1| 3052|Homo sapiens DNA polymerase zeta
catalytic subunit variant 2 protein.
Length = 3052
Score = 31.9 bits (69), Expect = 2.1
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +1
Query: 160 KFLRKERQYRKLNTKCNKGPRASYHQ--KD*SSSVGNNLKLASFLLPKTEPSKPYVLNNV 333
K L ++RQ + N + P ++ HQ K+ S S+ +N K T P KP +
Sbjct: 1453 KELLQKRQQKAQNANTTQDPLSNKHQPNKNISGSLEHN-KANKRTRSVTSPRKPRTPRST 1511
Query: 334 ILKPSLPAVSNTRKINLQSTEQ 399
K +P + +NLQ++ Q
Sbjct: 1512 KQKEKIPKLLKVDSLNLQNSSQ 1533
>AF179428-1|AAG09402.1| 3052|Homo sapiens DNA polymerase zeta
catalytic subunit variant 1 protein.
Length = 3052
Score = 31.9 bits (69), Expect = 2.1
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +1
Query: 160 KFLRKERQYRKLNTKCNKGPRASYHQ--KD*SSSVGNNLKLASFLLPKTEPSKPYVLNNV 333
K L ++RQ + N + P ++ HQ K+ S S+ +N K T P KP +
Sbjct: 1453 KELLQKRQQKAQNANTTQDPLSNKHQPNKNISGSLEHN-KANKRTRSVTSPRKPRTPRST 1511
Query: 334 ILKPSLPAVSNTRKINLQSTEQ 399
K +P + +NLQ++ Q
Sbjct: 1512 KQKEKIPKLLKVDSLNLQNSSQ 1533
>AF157476-1|AAD40184.1| 3130|Homo sapiens DNA polymerase zeta
catalytic subunit protein.
Length = 3130
Score = 31.9 bits (69), Expect = 2.1
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +1
Query: 160 KFLRKERQYRKLNTKCNKGPRASYHQ--KD*SSSVGNNLKLASFLLPKTEPSKPYVLNNV 333
K L ++RQ + N + P ++ HQ K+ S S+ +N K T P KP +
Sbjct: 1531 KELLQKRQQKAQNANTTQDPLSNKHQPNKNISGSLEHN-KANKRTRSVTSPRKPRTPRST 1589
Query: 334 ILKPSLPAVSNTRKINLQSTEQ 399
K +P + +NLQ++ Q
Sbjct: 1590 KQKEKIPKLLKVDSLNLQNSSQ 1611
>AF071798-1|AAC24009.1| 3130|Homo sapiens DNA polymerase zeta
catalytic subunit protein.
Length = 3130
Score = 31.9 bits (69), Expect = 2.1
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +1
Query: 160 KFLRKERQYRKLNTKCNKGPRASYHQ--KD*SSSVGNNLKLASFLLPKTEPSKPYVLNNV 333
K L ++RQ + N + P ++ HQ K+ S S+ +N K T P KP +
Sbjct: 1531 KELLQKRQQKAQNANTTQDPLSNKHQPNKNISGSLEHN-KANKRTRSVTSPRKPRTPRST 1589
Query: 334 ILKPSLPAVSNTRKINLQSTEQ 399
K +P + +NLQ++ Q
Sbjct: 1590 KQKEKIPKLLKVDSLNLQNSSQ 1611
>AF058701-1|AAC24357.1| 3130|Homo sapiens DNA polymerase zeta
catalytic subunit protein.
Length = 3130
Score = 31.9 bits (69), Expect = 2.1
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +1
Query: 160 KFLRKERQYRKLNTKCNKGPRASYHQ--KD*SSSVGNNLKLASFLLPKTEPSKPYVLNNV 333
K L ++RQ + N + P ++ HQ K+ S S+ +N K T P KP +
Sbjct: 1531 KELLQKRQQKAQNANTTQDPLSNKHQPNKNISGSLEHN-KANKRTRSVTSPRKPRTPRST 1589
Query: 334 ILKPSLPAVSNTRKINLQSTEQ 399
K +P + +NLQ++ Q
Sbjct: 1590 KQKEKIPKLLKVDSLNLQNSSQ 1611
>BC045814-1|AAH45814.1| 497|Homo sapiens ZNF20 protein protein.
Length = 497
Score = 31.5 bits (68), Expect = 2.8
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 429 HRQEDCKVKRWHVDP*ESR*KSATKDKPKEKYVCTSTII 545
+R ++CK ++D +S K+ TK+KP + CT T I
Sbjct: 108 YRNKECKKAFSYLDSFQSHDKACTKEKPYDGKECTETFI 146
>BC036714-1|AAH36714.3| 532|Homo sapiens zinc finger protein 20
protein.
Length = 532
Score = 31.5 bits (68), Expect = 2.8
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 429 HRQEDCKVKRWHVDP*ESR*KSATKDKPKEKYVCTSTII 545
+R ++CK ++D +S K+ TK+KP + CT T I
Sbjct: 143 YRNKECKKAFSYLDSFQSHDKACTKEKPYDGKECTETFI 181
>AF078695-1|AAC28460.1| 3052|Homo sapiens DNA polymerase zeta
catalytic subunit protein.
Length = 3052
Score = 31.1 bits (67), Expect = 3.7
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +1
Query: 160 KFLRKERQYRKLNTKCNKGPRASYHQ--KD*SSSVGNNLKLASFLLPKTEPSKPYVLNNV 333
K L ++RQ N + P ++ HQ K+ S S+ +N K T P KP +
Sbjct: 1453 KELLQKRQQEAQNANTTQDPLSNKHQPNKNISGSLEHN-KANKRTRSVTSPRKPRTPRST 1511
Query: 334 ILKPSLPAVSNTRKINLQSTEQ 399
K +P + +NLQ++ Q
Sbjct: 1512 KQKEKIPKLLKVDSLNLQNSSQ 1533
>AF035537-1|AAB88486.1| 3052|Homo sapiens DNA polymerase zeta protein.
Length = 3052
Score = 31.1 bits (67), Expect = 3.7
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +1
Query: 160 KFLRKERQYRKLNTKCNKGPRASYHQ--KD*SSSVGNNLKLASFLLPKTEPSKPYVLNNV 333
K L ++RQ N + P ++ HQ K+ S S+ +N K T P KP +
Sbjct: 1453 KELLQKRQQEAQNANTTQDPLSNKHQPNKNISGSLEHN-KANKRTRSVTSPRKPRTPRST 1511
Query: 334 ILKPSLPAVSNTRKINLQSTEQ 399
K +P + +NLQ++ Q
Sbjct: 1512 KQKEKIPKLLKVDSLNLQNSSQ 1533
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,224,961
Number of Sequences: 237096
Number of extensions: 2086868
Number of successful extensions: 4538
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4538
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7478817430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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