Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1964
         (663 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051817-1|AAK93241.1|  491|Drosophila melanogaster LD32366p pro...    30   3.2  
AE014134-1743|AAF52840.2|  491|Drosophila melanogaster CG5850-PA...    30   3.2  
AE014134-1742|ABI31304.1|  569|Drosophila melanogaster CG5850-PB...    30   3.2  
AY484405-1|AAR86939.1|  857|Drosophila melanogaster reverse tran...    28   9.9  
AY484404-1|AAR86938.1|  857|Drosophila melanogaster reverse tran...    28   9.9  
AF418572-1|AAL14648.1|  211|Drosophila melanogaster Orf1 protein.      28   9.9  

>AY051817-1|AAK93241.1|  491|Drosophila melanogaster LD32366p
           protein.
          Length = 491

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 468 QHAIF*LYNLPVYAKD-WYGIWCLLFCRL*IYFTSIRNCR*ARFQYNIVQYI 316
           +H I  L+ +P+YA + W G   L F +  IY  S+R C  A   YN + Y+
Sbjct: 84  KHIIRILWMVPIYALNAWIG---LFFPKHSIYVDSLRECYEAYVIYNFMVYL 132


>AE014134-1743|AAF52840.2|  491|Drosophila melanogaster CG5850-PA,
           isoform A protein.
          Length = 491

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 468 QHAIF*LYNLPVYAKD-WYGIWCLLFCRL*IYFTSIRNCR*ARFQYNIVQYI 316
           +H I  L+ +P+YA + W G   L F +  IY  S+R C  A   YN + Y+
Sbjct: 84  KHIIRILWMVPIYALNAWIG---LFFPKHSIYVDSLRECYEAYVIYNFMVYL 132


>AE014134-1742|ABI31304.1|  569|Drosophila melanogaster CG5850-PB,
           isoform B protein.
          Length = 569

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 468 QHAIF*LYNLPVYAKD-WYGIWCLLFCRL*IYFTSIRNCR*ARFQYNIVQYI 316
           +H I  L+ +P+YA + W G   L F +  IY  S+R C  A   YN + Y+
Sbjct: 84  KHIIRILWMVPIYALNAWIG---LFFPKHSIYVDSLRECYEAYVIYNFMVYL 132


>AY484405-1|AAR86939.1|  857|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 857

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 125 DVEQKPISDNLKSFYEKSGSIENSIPNVIK 214
           ++EQ   +D+ K+F+E   +IEN I   +K
Sbjct: 132 NIEQLMTTDDAKAFFESERNIENKITTTLK 161


>AY484404-1|AAR86938.1|  857|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 857

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 125 DVEQKPISDNLKSFYEKSGSIENSIPNVIK 214
           ++EQ   +D+ K+F+E   +IEN I   +K
Sbjct: 132 NIEQLMTTDDAKAFFESERNIENKITTTLK 161


>AF418572-1|AAL14648.1|  211|Drosophila melanogaster Orf1 protein.
          Length = 211

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 125 DVEQKPISDNLKSFYEKSGSIENSIPNVIK 214
           ++EQ   +D+ K+F+E   +IEN I   +K
Sbjct: 132 NIEQLMTTDDAKAFFESERNIENKITTTLK 161


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,272,745
Number of Sequences: 53049
Number of extensions: 618502
Number of successful extensions: 1664
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1664
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2848092300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)