Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1964
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U72348-1|AAB17273.1|  355|Caenorhabditis elegans putative transc...    31   0.96 
U39740-5|AAA80428.2|  355|Caenorhabditis elegans Lim domain fami...    31   0.96 
Z72508-2|CAA96635.1|  284|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U50072-1|ABP49527.1|  378|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z66495-3|CAA91270.2|  484|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    28   5.1  
AL117204-34|CAB55140.2|  348|Caenorhabditis elegans Hypothetical...    28   6.8  
Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z81093-2|CAB03146.1|  545|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z81044-12|CAB02811.2|  527|Caenorhabditis elegans Hypothetical p...    27   9.0  
AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical...    27   9.0  
AF067948-5|AAC17698.2|  243|Caenorhabditis elegans Hypothetical ...    27   9.0  
AC024794-2|AAK68498.1|  618|Caenorhabditis elegans Hypothetical ...    27   9.0  
AC006656-1|AAF39881.1|  592|Caenorhabditis elegans Hypothetical ...    27   9.0  

>U72348-1|AAB17273.1|  355|Caenorhabditis elegans putative
           transcription factor LIM-4 protein.
          Length = 355

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +3

Query: 405 TKYHTSLWHRQEDCKVKRWHV----DP*ESR*KSATKDKPKEKYVCTSTIIPPTSKLTSV 572
           +K  T +W +    + K+WH     D  +S+  S     P +K   +S ++ PTS  TSV
Sbjct: 279 SKRVTQVWFQNSRARQKKWHQKSEGDNGDSQRSSVGPSSPSQKSDSSSEMMYPTSVTTSV 338

Query: 573 Q 575
           +
Sbjct: 339 E 339


>U39740-5|AAA80428.2|  355|Caenorhabditis elegans Lim domain family
           protein 4 protein.
          Length = 355

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +3

Query: 405 TKYHTSLWHRQEDCKVKRWHV----DP*ESR*KSATKDKPKEKYVCTSTIIPPTSKLTSV 572
           +K  T +W +    + K+WH     D  +S+  S     P +K   +S ++ PTS  TSV
Sbjct: 279 SKRVTQVWFQNSRARQKKWHQKSEGDNGDSQRSSVGPSSPSQKSDSSSEMMYPTSVTTSV 338

Query: 573 Q 575
           +
Sbjct: 339 E 339


>Z72508-2|CAA96635.1|  284|Caenorhabditis elegans Hypothetical
           protein F28H7.2 protein.
          Length = 284

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 77  LINPNDSQANYIITLGDVEQKPISDNL-KSFYEKSGSIENSIPN 205
           L+     + N ++ +GD+ Q+ + +NL KS  +K G I+  + N
Sbjct: 50  LLGAGVPEGNVLVVVGDITQESVQENLIKSTLDKFGKIDILVNN 93


>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical
           protein ZK287.4 protein.
          Length = 1208

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
 Frame = +2

Query: 38  ATIVD-SSQLTPVYLINPNDSQANYII-------TLGDVEQKPISDNLKSFYEKSGSIEN 193
           +T+VD SSQ    Y+ +P  + +N  +         G   Q P S    +    SGS E+
Sbjct: 548 STVVDTSSQFQIPYVSSPASATSNIFVGPIPPPSNSGSSSQAPDSSQSATNSSNSGSGES 607

Query: 194 SIPNVIKAPAPRTIKKIDPAASG 262
            IPNV     P  + ++    +G
Sbjct: 608 KIPNVGPIAPPSQLSQVGVFVTG 630


>U50072-1|ABP49527.1|  378|Caenorhabditis elegans Hypothetical
           protein K06B9.2 protein.
          Length = 378

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +1

Query: 253 SVGNNLKLASFLLPKTEPSKPYVLNNVILKPSLPAVSNTRKINLQSTEQKTPNTIPVFG 429
           ++ N   +A+  +PK    K  ++ +V L   LP V    ++  +  EQKTP+   +FG
Sbjct: 164 AISNEADVATKCVPK---QKGELVGSVFLDRGLPRVVEYSELGAELAEQKTPDGKYLFG 219


>Z66495-3|CAA91270.2|  484|Caenorhabditis elegans Hypothetical
           protein C36A4.4 protein.
          Length = 484

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +1

Query: 253 SVGNNLKLASFLLPKTEPSKPYVLNNVILKPSLPAVSNTRKINLQSTEQKTPNTIPVFG 429
           ++ N   +A+  +PK    K  ++ +V L   LP V    ++  +  EQKTP+   +FG
Sbjct: 270 AISNEADVATKCVPK---QKGELVGSVCLDRGLPRVVEYSELGAELAEQKTPDGKYLFG 325


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
           protein Y40C5A.3 protein.
          Length = 2344

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 122 GDVEQKPISDNLKSFYEKSGSIENSIPNVIKAPAPRTIKK 241
           G+V+Q+ ++ + +     S S ENSI N+ K   P T+ K
Sbjct: 647 GEVDQEEVNPSERRPEISSISEENSIENISKTKTPTTVPK 686


>AL117204-34|CAB55140.2|  348|Caenorhabditis elegans Hypothetical
           protein Y116A8C.40 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 420 WYGIWCLLFCRL*IYFTSI 364
           WYG W  + C +  YFT +
Sbjct: 134 WYGAWWAILCYIYFYFTDV 152


>Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical
           protein Y6B3B.1 protein.
          Length = 1829

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 21/77 (27%), Positives = 34/77 (44%)
 Frame = +1

Query: 334 ILKPSLPAVSNTRKINLQSTEQKTPNTIPVFGIDRKIVKLKDGMLTRRNRVERALPKINP 513
           +L+PS PA  N  + NL   E + P   P+       +++K     R+ +V  A+  + P
Sbjct: 735 VLEPSPPAPKNPVEHNL---EAQNPTDPPILADPAPPIRIK-RKYVRKMKVPAAVGDVKP 790

Query: 514 KRSMFVLQQLSRRHRNS 564
            R     + L  R R S
Sbjct: 791 TRRTQKRKMLEDRDRTS 807


>Z81093-2|CAB03146.1|  545|Caenorhabditis elegans Hypothetical
           protein F58D2.1 protein.
          Length = 545

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = +2

Query: 74  YLINPNDSQ---ANYIITLGDVEQKPISDNLKSFYEKSGSIENSIPNVIKAPAPRTIKKI 244
           +L+ PN ++      ++ +     +  SD LKS +EK+  ++  I  +IK  APR  + +
Sbjct: 387 FLLEPNLTENPCTRAVVVMSQCVHRMHSDELKSLFEKTRHVKRLI-QLIKWSAPRKNELM 445

Query: 245 DPAASGII 268
             A+  II
Sbjct: 446 VSASIEII 453


>Z81044-12|CAB02811.2|  527|Caenorhabditis elegans Hypothetical
           protein C30H6.5 protein.
          Length = 527

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
 Frame = +1

Query: 160 KFLRKERQYRKLNTKCNKGPRASYHQKD*SSSVGNNLKLASFLLPKTEPSKPY---VLNN 330
           K+ R ER  +K     +KG +   ++   +S+    ++LA F       S P    ++ N
Sbjct: 137 KYARHERTVKK-----SKGLQIDLYENRCASTENETVRLAVFTEQTRTTSAPVRTSIVGN 191

Query: 331 VILKPSLPAVSNTRKINLQSTEQKTPNT 414
           VI+ P       T    + +T+Q  P T
Sbjct: 192 VIMAPVPNLNGTTTNAPISTTQQAIPTT 219


>AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical
           protein Y6B3B.1 protein.
          Length = 1829

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 21/77 (27%), Positives = 34/77 (44%)
 Frame = +1

Query: 334 ILKPSLPAVSNTRKINLQSTEQKTPNTIPVFGIDRKIVKLKDGMLTRRNRVERALPKINP 513
           +L+PS PA  N  + NL   E + P   P+       +++K     R+ +V  A+  + P
Sbjct: 735 VLEPSPPAPKNPVEHNL---EAQNPTDPPILADPAPPIRIK-RKYVRKMKVPAAVGDVKP 790

Query: 514 KRSMFVLQQLSRRHRNS 564
            R     + L  R R S
Sbjct: 791 TRRTQKRKMLEDRDRTS 807


>AF067948-5|AAC17698.2|  243|Caenorhabditis elegans Hypothetical
           protein T27C4.1 protein.
          Length = 243

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +1

Query: 271 KLASFLLPKTEPSKPYVL-----NNVILKPSLPAVSNTRKINLQSTEQKTPNTIPVFGID 435
           + A+F  P   P++P V      +NV    S P         +Q +E+K+P T+P   +D
Sbjct: 180 RFAAFASPDNSPNEPPVRVFPHSSNVAGMSSGPVPVMEEIAKVQPSEKKSPTTVPTDLLD 239

Query: 436 RKI 444
           +++
Sbjct: 240 QEV 242


>AC024794-2|AAK68498.1|  618|Caenorhabditis elegans Hypothetical
           protein Y48G1BM.6 protein.
          Length = 618

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 21/67 (31%), Positives = 28/67 (41%)
 Frame = +1

Query: 187 RKLNTKCNKGPRASYHQKD*SSSVGNNLKLASFLLPKTEPSKPYVLNNVILKPSLPAVSN 366
           RK     N     SY  K  +    + L      L + E  K Y L N I    LP+V N
Sbjct: 435 RKFTKFLNSEENQSYKNKLSNFEAVDFLSKCGLSLSQMEKIKNY-LTNAIGYDLLPSVKN 493

Query: 367 TRKINLQ 387
           TR +++Q
Sbjct: 494 TRDLSIQ 500


>AC006656-1|AAF39881.1|  592|Caenorhabditis elegans Hypothetical
           protein H12I13.1 protein.
          Length = 592

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 175 LFVKTFQVIRNRFLFNIAQSYNIIRLTVIRIYQINWC 65
           LFV + Q+    FL+ +A+  N   +T+ R Y+I  C
Sbjct: 283 LFVMSIQITNQSFLYRLAK--NSFSITLDRFYRIEVC 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,456,093
Number of Sequences: 27780
Number of extensions: 337484
Number of successful extensions: 936
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)