Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1963
         (885 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    43   0.009
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    43   0.009
UniRef50_Q6VB62 Cluster: ORF_08L; n=1; Herpes simplex virus 1 st...    33   9.7  
UniRef50_Q5A931 Cluster: Leucine carboxyl methyltransferase 2; n...    33   9.7  

>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 43.2 bits (97), Expect = 0.009
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = +1

Query: 253 GDGNHSPSGGPCARLPTSAIKKIVQTFCYQLLGMRRILGPHDA 381
           GDGNHSPSG P A LPT A  K+   F + ++ +  +    DA
Sbjct: 2   GDGNHSPSGRPYASLPTRAKMKLTSLFIFVIVALSLLFSSTDA 44


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 43.2 bits (97), Expect = 0.009
 Identities = 17/22 (77%), Positives = 18/22 (81%)
 Frame = -3

Query: 547 FFXLRWVEELTAHWCLSGYWSP 482
           F  LRWV+ELTAH  LSGYWSP
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_Q6VB62 Cluster: ORF_08L; n=1; Herpes simplex virus 1
           strain R-15|Rep: ORF_08L - Human herpesvirus 1 (strain
           R15) (HHV-1) (Human herpes simplex virus1)
          Length = 124

 Score = 33.1 bits (72), Expect = 9.7
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +1

Query: 196 FRFSVGSGLALPLGIAEVH--GDGNHSPSGGPCARLPTSAIKKIVQTFCYQL 345
           FR  V S L LP G+A+VH  G   H     P AR  T +      T  YQ+
Sbjct: 26  FRGGVESSLHLPYGVAQVHAPGSAGHLQQAAPRARGQTGSAVSHQVTVAYQV 77


>UniRef50_Q5A931 Cluster: Leucine carboxyl methyltransferase 2; n=3;
           Saccharomycetales|Rep: Leucine carboxyl
           methyltransferase 2 - Candida albicans (Yeast)
          Length = 689

 Score = 33.1 bits (72), Expect = 9.7
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = -2

Query: 149 FLIRLILIPNIISEYIVPVFVSYRIVRIS 63
           F  + + IPN+ISE + P+FV + +V+I+
Sbjct: 633 FTFKSVEIPNVISEKVPPIFVGFELVQIN 661


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 790,491,025
Number of Sequences: 1657284
Number of extensions: 15419455
Number of successful extensions: 35344
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35291
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79522270534
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)