Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1963
         (885 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    27   0.20 
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    23   2.4  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   3.2  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    23   3.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.6  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 645 YCYFLNLNFTYLFVNMAVYVXLN*IFSPLKIGKLKLFTIF 764
           YC F+ L +  +FV +  Y  L+   +P+  GKL  F  F
Sbjct: 321 YCNFIILFYLSVFVILVYYASLDETPNPVTNGKLYNFNTF 360


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/39 (17%), Positives = 24/39 (61%)
 Frame = +3

Query: 618 YVGNLFLKIYCYFLNLNFTYLFVNMAVYVXLN*IFSPLK 734
           ++ ++ ++++ Y++  +FTY   N  +++  + +  P+K
Sbjct: 135 WISSVGVRMFQYYIGRSFTYYVCNTTIFLIFHSVL-PIK 172


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +1

Query: 184 CHISFRFSVGSGLALPLGIAEVHGDGNHSPSGG 282
           CH  F   +G  L + +G   ++   +H P  G
Sbjct: 671 CHFLFHIVIGMNLIIHVGTQLIYRPFSHFPRCG 703


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -2

Query: 209 TENRKLI*QVSM-FD*INKCRFLIRLILIPNIISEYIVPVFVSYRIVRISCRIPAAPGDP 33
           TEN+K I   S+ F+   K      +++IP  ++ +IVP F   R + +    P     P
Sbjct: 104 TENQKKIFDESVIFE--RKVMKNFAILIIPTCVAMFIVPYFQDRREMPLIVWFPFDYKQP 161

Query: 32  LV 27
           +V
Sbjct: 162 VV 163


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 253 GDGNHSPSGGPCARL 297
           G GN+ P GGP + +
Sbjct: 530 GSGNNQPPGGPSSHV 544


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,909
Number of Sequences: 336
Number of extensions: 4145
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24513621
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)