Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1963
         (885 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0134 - 1224084-1224269,1224578-1224662,1224763-1225050,122...    30   2.8  
05_03_0430 - 13945146-13945354,13945550-13946135,13946396-139464...    28   8.7  
01_06_0742 - 31611005-31611843,31611930-31612092,31613463-316135...    28   8.7  

>01_01_0134 -
           1224084-1224269,1224578-1224662,1224763-1225050,
           1225114-1225334,1225511-1225642,1226218-1226494,
           1226722-1226770,1226993-1227088,1227779-1227911,
           1228241-1228391,1228484-1228674,1229167-1229382
          Length = 674

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 264 PLTIRWAVCSSAYKRNKKNCSNFLLSVTRDEA 359
           P+TIRWA  + A K  + + + FLLS    EA
Sbjct: 53  PVTIRWARITCALKNKRGDVARFLLSNASGEA 84


>05_03_0430 -
           13945146-13945354,13945550-13946135,13946396-13946477,
           13946584-13946942
          Length = 411

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 253 GDGNHSPSGGPCARLPTSAIKKIVQTFCYQLLGMRRILGP 372
           GDG  SPS G  ++  TS  KK +      L G +++  P
Sbjct: 332 GDGASSPSNGRVSKPTTSLPKKTINASITSLFGPKKLEEP 371


>01_06_0742 -
           31611005-31611843,31611930-31612092,31613463-31613538,
           31613615-31613731,31613852-31614016,31614100-31614190,
           31614824-31614908,31615013-31615195,31615748-31615996
          Length = 655

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 769 YWKMVNNFNFPILRGLNIQF 710
           YWK V +FN P+  G+  +F
Sbjct: 268 YWKFVKSFNHPVCIGMRFKF 287


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,393,503
Number of Sequences: 37544
Number of extensions: 425642
Number of successful extensions: 857
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)