Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1963
         (885 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40797-7|AAB37546.1|  195|Caenorhabditis elegans Hypothetical pr...    32   0.47 
Z68299-2|CAA92611.2|  344|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF016451-8|AAB66004.2|  354|Caenorhabditis elegans Serpentine re...    29   5.8  

>U40797-7|AAB37546.1|  195|Caenorhabditis elegans Hypothetical
           protein C28C12.3 protein.
          Length = 195

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +1

Query: 172 NIDTCHISFRFSVGSGLALPLGIAEVHGDGNHSPSGGP 285
           N+  C I+F F V   +A P G    HG G H P GGP
Sbjct: 4   NLLFCTIAFVF-VAVAMAGPGGRGGPHGPGGHGPRGGP 40


>Z68299-2|CAA92611.2|  344|Caenorhabditis elegans Hypothetical
           protein T04B2.4 protein.
          Length = 344

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 609 LFNYVGNLFLKIYCYFLNLNFTYLFV 686
           +F  +G +FL + C FL L + YLF+
Sbjct: 202 IFFVIGGVFLFVNCLFLVLTYCYLFI 227


>AF016451-8|AAB66004.2|  354|Caenorhabditis elegans Serpentine
           receptor, class t protein65 protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 600 ILKLFNYVGNLFLKIYCYFLNLNFTYLFVNMAVYVXLN*IFSPLKIGKLKLFTIFQ 767
           +L++   V  L +KI C F+  +F YL       V L   FSP    + K+F  +Q
Sbjct: 18  LLQICRNVKILCIKILCKFITWDFLYLIKLHDELVKLK--FSPKVYARFKIFKTYQ 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,236,153
Number of Sequences: 27780
Number of extensions: 369228
Number of successful extensions: 813
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)