Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1963
         (885 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.9  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   6.5  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -2

Query: 206 ENRKLI*QVSMFD*INKCRFLIRLILIPNIISEYIVPVFVSYRIVRISC 60
           E   L  + S FD IN  R     I +P+I+   +  V +   +  + C
Sbjct: 91  EQSHLTWKSSEFDSINSIRVKSYEIWVPDIVMHSVTSVGIDLEMPSVEC 139


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 268 SPSGGPCARLPTSAIKKIVQTFCYQLLGMRRILGPHD 378
           +P G  C+ + T  IKK V+   Y  +      G +D
Sbjct: 278 TPKGSKCSMITTPEIKKEVEDMEYDDIKTELSTGMND 314


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 45  RCRNSARDTNNTIRHKN 95
           RC NS    NN  +H N
Sbjct: 582 RCANSDNQNNNQNKHNN 598


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,153
Number of Sequences: 438
Number of extensions: 4760
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)