Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1962
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    28   1.4  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    26   4.1  
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   5.5  

>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +1

Query: 28  CFQ*RNKYKTNKWIDVSLNASYVELLSK*IQFSAINKNRH--NSVIKDQDYRSEWKKNYI 201
           CFQ    Y+    I ++ NA  ++ LSK +   A+++  H  N   K  +   + K+ ++
Sbjct: 141 CFQCNQVYEEKDVIPINPNAEQLKTLSKRLLDLALSEKTHSLNKASKKSNKNGDKKRKHV 200

Query: 202 S 204
           S
Sbjct: 201 S 201


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 342 ETRIHIYLQSFKSSNAGRDLCDFL 271
           ET ++IY+QSF+++N    +C  L
Sbjct: 482 ETTLYIYVQSFQNANQTVSICGSL 505


>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 110 FESNST*DAFKLTSIHLLVLYLFLY 36
           F+SN T   F L S+H  V YLF+Y
Sbjct: 75  FDSNET--IFFLYSLHRCVYYLFIY 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,424
Number of Sequences: 5004
Number of extensions: 44258
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)