Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1962
         (653 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC131629-1|AAI31630.1|  709|Homo sapiens transmembrane and coile...    31   3.6  
BC041019-1|AAH41019.1|  505|Homo sapiens TMCC2 protein protein.        31   3.6  
AK131419-1|BAD18566.1|  709|Homo sapiens protein ( Homo sapiens ...    31   3.6  
AB007950-1|BAA32326.3|  732|Homo sapiens KIAA0481 protein protein.     31   3.6  
AB001596-1|BAB46924.1|  484|Homo sapiens cerebral protein-11 pro...    31   3.6  

>BC131629-1|AAI31630.1|  709|Homo sapiens transmembrane and
           coiled-coil domain family 2 protein.
          Length = 709

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -1

Query: 80  KLTSIHLLVLYLFLYWKHYWSSNSF 6
           ++TS  LLVL LFL WKH W S ++
Sbjct: 677 RITSTTLLVLVLFLLWKH-WDSLTY 700


>BC041019-1|AAH41019.1|  505|Homo sapiens TMCC2 protein protein.
          Length = 505

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -1

Query: 80  KLTSIHLLVLYLFLYWKHYWSSNSF 6
           ++TS  LLVL LFL WKH W S ++
Sbjct: 473 RITSTTLLVLVLFLLWKH-WDSLTY 496


>AK131419-1|BAD18566.1|  709|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16535 fis, clone OCBBF2030116. ).
          Length = 709

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -1

Query: 80  KLTSIHLLVLYLFLYWKHYWSSNSF 6
           ++TS  LLVL LFL WKH W S ++
Sbjct: 677 RITSTTLLVLVLFLLWKH-WDSLTY 700


>AB007950-1|BAA32326.3|  732|Homo sapiens KIAA0481 protein protein.
          Length = 732

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -1

Query: 80  KLTSIHLLVLYLFLYWKHYWSSNSF 6
           ++TS  LLVL LFL WKH W S ++
Sbjct: 700 RITSTTLLVLVLFLLWKH-WDSLTY 723


>AB001596-1|BAB46924.1|  484|Homo sapiens cerebral protein-11
           protein.
          Length = 484

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -1

Query: 80  KLTSIHLLVLYLFLYWKHYWSSNSF 6
           ++TS  LLVL LFL WKH W S ++
Sbjct: 452 RITSTTLLVLVLFLLWKH-WDSLTY 475


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,486,657
Number of Sequences: 237096
Number of extensions: 1283726
Number of successful extensions: 5247
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5247
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)