Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1962
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92973-1|CAB07493.2|  323|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U18384-1|AAA62504.1|  293|Caenorhabditis elegans collagen protein.     28   5.0  

>Z92973-1|CAB07493.2|  323|Caenorhabditis elegans Hypothetical
           protein Y6G8.1 protein.
          Length = 323

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = -1

Query: 419 RMTCLI*SFYYSLSAEII*RLLMSKPKLESIYIYKVSSPQT----QVEIYVIFST*YDTF 252
           R+TCL+ S    +SA +   ++ S  K  S+  +K   PQT    Q  I +IF + Y  F
Sbjct: 182 RITCLVLSVLIFVSAILYIPIMFSVRKQSSLRAFKKDRPQTYIFWQTMIVLIFKSTYIPF 241


>U18384-1|AAA62504.1|  293|Caenorhabditis elegans collagen protein.
          Length = 293

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = -1

Query: 650 RELLFTIFKKLTM*TIKHGGNITLLLHITNHLKWLKCYKTLVLM--NIMSIYNSRVNCFL 477
           R+L  T   +  +  IK   + +LLL + ++   LKC+K L+    +I  IY+  +   +
Sbjct: 218 RDLAITAHHQELLQDIKRNFSKSLLLILVSYCIVLKCFKCLIFQGTSINDIYHFILPLLV 277

Query: 476 IKCIYSRDSH 447
           I+   S  SH
Sbjct: 278 IRQTISDTSH 287


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,856,372
Number of Sequences: 27780
Number of extensions: 233745
Number of successful extensions: 393
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)