Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1962
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.4  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    23   3.4  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    23   3.4  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    23   3.4  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    23   3.4  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    23   3.4  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    23   3.4  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    23   3.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.0  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 602 KHGGNITL-LLHITNHLKWLKCYKTLVLMNIMSIYNSRVNCFLIKCIYSRDS 450
           K+  ++T   + I NH  WL   KT++ M  +++   +++C +   IY  D+
Sbjct: 126 KNAKSVTFQTMTIPNHYLWLYKDKTILYMVKLTL---KLSCAMNFLIYPHDT 174


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 446 NDYLYCKYI*LRNN*HANYKST*Y 517
           N+Y Y  Y    NN + NYK   Y
Sbjct: 87  NNYKYSNYNNYNNNYNTNYKKLQY 110


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 446 NDYLYCKYI*LRNN*HANYKST*Y 517
           N+Y Y  Y    NN + NYK   Y
Sbjct: 87  NNYKYSNYNNYNNNYNTNYKKLQY 110


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 446 NDYLYCKYI*LRNN*HANYKST*Y 517
           N+Y Y  Y    NN + NYK   Y
Sbjct: 87  NNYKYSNYNNYNNNYNTNYKKLQY 110


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 446 NDYLYCKYI*LRNN*HANYKST*Y 517
           N+Y Y  Y    NN + NYK   Y
Sbjct: 87  NNYKYSNYNNYNNNYNTNYKKLQY 110


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 446 NDYLYCKYI*LRNN*HANYKST*Y 517
           N+Y Y  Y    NN + NYK   Y
Sbjct: 87  NNYKYSNYNNYNNNYNTNYKKLQY 110


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 446 NDYLYCKYI*LRNN*HANYKST*Y 517
           N+Y Y  Y    NN + NYK   Y
Sbjct: 87  NNYKYSNYNNYNNNYNTNYKKLQY 110


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 446 NDYLYCKYI*LRNN*HANYKST*Y 517
           N+Y Y  Y    NN + NYK   Y
Sbjct: 87  NNYKYSNYNNYNNNYNTNYKKLQY 110


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 575 LHITNHLKWLKCYKTLVLMNIMSI 504
           + I NH  WL   KTL+ M+ +++
Sbjct: 105 MSIPNHYLWLYHDKTLLYMSKLTL 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,185
Number of Sequences: 438
Number of extensions: 3666
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)