Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1961
(715 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 62 6e-11
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 48 1e-06
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 37 0.002
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 36 0.004
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 36 0.004
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 35 0.010
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 35 0.013
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 33 0.031
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 33 0.041
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 33 0.041
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 33 0.054
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 33 0.054
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 33 0.054
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 32 0.094
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 32 0.094
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 32 0.094
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 32 0.094
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 31 0.12
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 31 0.12
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 31 0.16
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 31 0.16
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 31 0.22
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 31 0.22
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 30 0.29
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 30 0.38
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 30 0.38
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 29 0.50
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 29 0.50
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 29 0.66
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 29 0.66
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 29 0.66
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 29 0.87
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 28 1.2
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc... 27 2.7
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 27 2.7
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 27 3.5
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 27 3.5
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 27 3.5
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 27 3.5
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 26 4.7
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 26 4.7
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 26 4.7
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 26 4.7
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 26 4.7
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa... 26 6.1
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 26 6.1
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 26 6.1
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 26 6.1
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 25 8.1
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 8.1
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 25 8.1
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces... 25 8.1
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 25 8.1
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 62.5 bits (145), Expect = 6e-11
Identities = 27/67 (40%), Positives = 41/67 (61%)
Frame = +3
Query: 507 HKVHAIPLRSSWVMTCAYAPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSG*LS 686
+KV S W+MTCA++PS +A GGL+N C +Y + + EL GH+G +S
Sbjct: 54 NKVAFFEAPSVWIMTCAFSPSTKSIAAGGLNNFCVVYDTSVPDAD---PVELVGHAGFVS 110
Query: 687 CCRFLDD 707
CC+++DD
Sbjct: 111 CCKYVDD 117
Score = 32.7 bits (71), Expect = 0.054
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 373 IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSH 501
+ ++ R L+ L KI + +D + L+SAS + L+VWD H
Sbjct: 9 VNIQGTRVLKNKLGKIPDIDISTDGKYLLSASTNDVLLVWDLH 51
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = +1
Query: 394 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
TLRGH+A +Y W +DSR LVS+SQD L VWD
Sbjct: 426 TLRGHVAAVYQCAWSTDSRLLVSSSQDTTLKVWD 459
Score = 31.1 bits (67), Expect = 0.16
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 352 NLEPIGRIQMRTRR-TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 498
N I +++RT TL GH A I + WG + + S+S D + +WD+
Sbjct: 249 NTVRIWNVKLRTLLFTLSGHTAPITCVRWGGQNW-IYSSSYDKTIRIWDA 297
Score = 28.7 bits (61), Expect = 0.87
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 534 SSWVMTCAYAPSGSYVACGGLDNICSIYSLK 626
++WV A+AP S +A G +DN + K
Sbjct: 177 TNWVSCVAWAPDASIIATGSMDNTIRFWDPK 207
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 397 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSH 501
L GH +++A+ W D + + S D + +W SH
Sbjct: 469 LPGHEDQVFAVDWSPDGQRVASGGADKAVRIW-SH 502
Score = 27.1 bits (57), Expect = 2.7
Identities = 9/34 (26%), Positives = 17/34 (50%)
Frame = +1
Query: 394 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
T++GH + + W D+ + + S D + WD
Sbjct: 172 TMKGHTNWVSCVAWAPDASIIATGSMDNTIRFWD 205
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 376 QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
Q R R L GH +IY++ + D + LVS S D + +WD
Sbjct: 365 QKRVYRLLTGHEQEIYSLDFSKDGKTLVSGSGDRTVCLWD 404
Score = 29.1 bits (62), Expect = 0.66
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 397 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
L GH +Y++ + D + LVS S D + +W+
Sbjct: 454 LHGHEESVYSVAFSPDGKYLVSGSLDNTIKLWE 486
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 543 VMTCAYAPSGSYVACGGLDNICSIYSLK 626
V + A++P G Y+ G LDN ++ L+
Sbjct: 461 VYSVAFSPDGKYLVSGSLDNTIKLWELQ 488
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 540 WVMTCAYAPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGH 671
+V + A++P G Y+A G D I+ + + RV R L GH
Sbjct: 336 YVRSVAFSPDGKYLATGVEDQQIRIWDIAQK----RVYRLLTGH 375
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 36.3 bits (80), Expect = 0.004
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 388 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
++ L GH + + W +D L+S S D +LIVWD
Sbjct: 38 QKELTGHTGCVNTLDWSADGEFLLSGSDDTRLIVWD 73
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 36.3 bits (80), Expect = 0.004
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +1
Query: 391 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
R L GH I ++ W S R L++AS+D K I+WD
Sbjct: 60 RVLTGHTRAIQSVCWSSCDRFLLTASRDWKCILWD 94
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 35.1 bits (77), Expect = 0.010
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +1
Query: 271 QEAETLKNAIRDARKAACDTSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSR 450
Q + + +AI D T + T + I Q TLRGH ++ + W
Sbjct: 7 QHDDMIHDAILDYYGKRLATCSSDQTIKVFSIENNQQTLLETLRGHSGPVWQLGWAHPKF 66
Query: 451 N--LVSASQDGKLIVW 492
L SAS DG +IVW
Sbjct: 67 GTILASASYDGHVIVW 82
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 34.7 bits (76), Expect = 0.013
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1
Query: 391 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
R L GHLA+I + + DS L S S D K+ +WD
Sbjct: 92 RRLGGHLAQINTIRYNEDSSILASGSFDSKVRLWD 126
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 33.5 bits (73), Expect = 0.031
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 394 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 498
TL+GH +++ + W SD L S D + +WD+
Sbjct: 299 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDA 333
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 504 DHKVHAIPLRSSWVMTCAYAPSGSYVACGGLDNICSIYSLKT 629
+H++ + SS V A+ G +A GG DN+ I+ ++
Sbjct: 294 NHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS 335
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 33.1 bits (72), Expect = 0.041
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +3
Query: 510 KVHAIPLRSSWV--MTCA-YAPSGSYVACGGLDNICSIYSLKTRE 635
K H + + S+ +TC ++P G ++A GG D++ SIYS R+
Sbjct: 353 KEHVLDVFHSYFAGLTCVTWSPDGKFIAIGGKDDLVSIYSFPLRK 397
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 33.1 bits (72), Expect = 0.041
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 373 IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
+ R TL GH I + W + S+ L SAS D + +WD
Sbjct: 84 LTFRLECTLFGHYRGISQVKWATGSKYLASASDDKTIRIWD 124
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 32.7 bits (71), Expect = 0.054
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 397 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 498
L GH+ + + W D R L+S S D +I+WD+
Sbjct: 251 LIGHIDTVAYIRWSPDDRYLLSCSCDKSVILWDA 284
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 32.7 bits (71), Expect = 0.054
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 397 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
LRGHLA + ++ + S + +V+AS D L WD
Sbjct: 343 LRGHLASVNSVQYSSKTGLIVTASSDRTLRTWD 375
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 397 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
L GH + + + LVS S D +I+WD
Sbjct: 257 LYGHSGSVLCLDFCRRRNLLVSGSSDSTIIIWD 289
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 32.7 bits (71), Expect = 0.054
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 382 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
R +T+RGH IY++ + +S LVS D + WD
Sbjct: 538 RRIKTMRGHRGNIYSLSFSRESTVLVSGGSDCTVRAWD 575
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +1
Query: 391 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
R GH + A+ D + SA +G + +WD
Sbjct: 499 RVFNGHTQPVTAVAIAPDGHTMASADSEGLIHLWD 533
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 31.9 bits (69), Expect = 0.094
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 391 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
R L H ++ + W S+ L S D L+VWD
Sbjct: 368 RVLTAHRQEVCGLEWNSNENLLASGGNDNALMVWD 402
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 31.9 bits (69), Expect = 0.094
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 394 TLRGHLAKIYAMHWG-SDSRNLVSASQDGKLIVWD 495
TL GH ++Y + W D L S+S D ++ +WD
Sbjct: 320 TLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWD 354
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 31.9 bits (69), Expect = 0.094
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 382 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
R+ R L GH I + W DS+ +VS D +IVW+
Sbjct: 125 RSYRRLLGHDNDIQDLCWSYDSQLVVSVGLDSSIIVWN 162
Score = 27.5 bits (58), Expect = 2.0
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +1
Query: 400 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 498
RGH I+++H D + + DG + +W +
Sbjct: 15 RGHRLSIFSIHIHPDGSRIATGGLDGTIRIWST 47
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 31.9 bits (69), Expect = 0.094
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +1
Query: 325 DTSLAQATSNLEPIGRI-QMRTRRT---LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 492
D SL + N + IGRI +R+ ++ L H+ +I AM W + L ++S D + +W
Sbjct: 318 DGSLVSSGGN-DAIGRIWDLRSGKSIMVLDEHIRQIVAMAWSPNGYQLATSSADDTVKIW 376
Query: 493 D 495
D
Sbjct: 377 D 377
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 397 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSH 501
L GHLA++ + + LVSAS D +WD H
Sbjct: 261 LEGHLARVGRVAFHPSGDYLVSASFDTTWRLWDVH 295
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 31.5 bits (68), Expect = 0.12
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 397 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
LRGH A I+A+ + L+SA +GK+ +WD
Sbjct: 225 LRGHAAWIFAVAFNPVGDLLLSADVEGKIKIWD 257
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 31.5 bits (68), Expect = 0.12
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = +1
Query: 328 TSLAQATSNLEPIGRIQMRTRRTLRG----HLAKIYAMHWGSDSR-NLVSASQDGKLIVW 492
TS TS + + Q TR RG H + +++ +DS NLVS S+DG +I W
Sbjct: 197 TSSGDQTSKVFDLSTQQCITRLGRRGVDGYHSHSVKQVNFCNDSPYNLVSCSRDGSIIFW 256
Query: 493 D 495
D
Sbjct: 257 D 257
Score = 29.9 bits (64), Expect = 0.38
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 403 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 498
GH + A+ W S+ + L S S DG + VW+S
Sbjct: 435 GHTKDVTAVDWSSEGQ-LASISDDGSVRVWNS 465
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 31.1 bits (67), Expect = 0.16
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -3
Query: 221 HVEQTIDNRAPRTYNTQRTDPSVSNVPS 138
+V + +N +P Y+ RT+P+V+N+PS
Sbjct: 384 NVSRNSNNNSPEGYDNNRTNPTVNNLPS 411
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 31.1 bits (67), Expect = 0.16
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 546 MTC-AYAPSGSYVACGGLDNICSIYSLKTRE 635
+TC AY+P G Y+ACG +Y +RE
Sbjct: 482 ITCLAYSPDGKYLACGDASGKVVLYDANSRE 512
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +1
Query: 334 LAQATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
+ + NL + + T+ GH I A D+ + +AS DG ++ WD
Sbjct: 290 VVNSKGNLTYLNPSDCKVIDTIYGHQRSITAATLSPDATHFYTASYDGTVLSWD 343
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 30.7 bits (66), Expect = 0.22
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 397 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
LRGH+ ++Y++ + +SA D K+ +W+
Sbjct: 613 LRGHVGRVYSVTINPSRQQCISAGTDAKIRIWN 645
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +1
Query: 391 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 492
RTLRGH + + D +VSAS DG L VW
Sbjct: 571 RTLRGHTDSVREVACLGDL--IVSASYDGTLRVW 602
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 30.7 bits (66), Expect = 0.22
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +1
Query: 328 TSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
T A AT N+ + R L+GH ++ + +DS LV+AS D +W+
Sbjct: 232 TCSADATVNIWSTEDMSFMLERRLQGHQRWVWDCAFSADSTYLVTASSDHVARLWE 287
Score = 29.9 bits (64), Expect = 0.38
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 394 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
T GH + A+ + D + L ++S+DG + VWD
Sbjct: 78 TFEGHTNNVTAIAFHCDGKWLATSSEDGTVKVWD 111
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +3
Query: 540 WVMTCAYAPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSG*LSCCRFLDDNQ 713
WV CA++ +Y+ D++ ++ L + E R+ GH + C L+D Q
Sbjct: 261 WVWDCAFSADSTYLVTASSDHVARLWELSSGE----TIRQYSGHHK-AAVCVALNDYQ 313
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 30.3 bits (65), Expect = 0.29
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 394 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 498
T++ H + A+ D R + SASQD + +WDS
Sbjct: 460 TIKAHDRDVNAIQVSKDGRIIASASQDKTIKLWDS 494
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 391 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 492
+TL GH I + + S +VSA+ DG + VW
Sbjct: 543 QTLEGHTGAILKLIYISQGTQVVSAAADGLVKVW 576
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 397 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
LRGH ++A + SR L S S D + +W+
Sbjct: 503 LRGHRRGVWACSFNPFSRQLASGSGDRTIRIWN 535
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 29.9 bits (64), Expect = 0.38
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 394 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
TL GH + + M + L S S D +IVWD
Sbjct: 99 TLNGHKSAVTTMDFDKMGTRLASGSMDTDIIVWD 132
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 29.9 bits (64), Expect = 0.38
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +1
Query: 400 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
+ H + + + SD + +++ + DGK+ VWD
Sbjct: 336 QSHYDALSTLQYSSDGQRIITGADDGKIKVWD 367
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 391 RTLRGHLAKIYAMHWGSDSRNLVSASQD 474
R GH I ++ W +DSR +S S+D
Sbjct: 140 REYTGHFDDIVSISWSADSRFFISTSKD 167
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +1
Query: 346 TSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 492
T+ L + I+ L GH + + + D + + + S+DG L VW
Sbjct: 169 TARLHSVDPIEGFHPCALTGHKNTVVSGFFSKDQQTIYTVSKDGALFVW 217
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 394 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
TL GH + ++ + S L S S D + +WD
Sbjct: 462 TLAGHEGPVSSLSFNSSGSLLASGSWDKTVRIWD 495
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 29.5 bits (63), Expect = 0.50
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 397 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
LRGH +IY++ + + +S S D + VWD
Sbjct: 543 LRGHSLRIYSVLYEPERNICISGSMDKSIRVWD 575
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 29.5 bits (63), Expect = 0.50
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 391 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 498
RT +GH I + + D R+ +S S D + +WD+
Sbjct: 304 RTFQGHARPIRDLSFSQDGRSFLSTSFDKTIKLWDT 339
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 555 AYAPSGSYVACGGLDNICSIYS 620
A P+G +AC LDN +YS
Sbjct: 446 ALRPNGKSIACQSLDNCIYVYS 467
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 29.1 bits (62), Expect = 0.66
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 397 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 492
L+GH ++A+ + + L SA DG + +W
Sbjct: 463 LQGHTNTVWALAFSPNGNTLASADNDGNVFLW 494
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 29.1 bits (62), Expect = 0.66
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +1
Query: 328 TSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSH 501
T+LA L + + + + R ++IY + W DS L++ + D L ++D+H
Sbjct: 102 TTLADDAEELA-LAKEYWKVKIVCRSMGSEIYDLCWSVDSNFLIAGAMDNSLRLYDAH 158
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 29.1 bits (62), Expect = 0.66
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +1
Query: 373 IQMRTRRTLR---GHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
+ ++TR+ +R GH ++ + + R LV+AS DG + WD
Sbjct: 557 VDVQTRKIVRELWGHSNRLTSFDFSDTGRWLVTASLDGTIRTWD 600
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 28.7 bits (61), Expect = 0.87
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 397 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
L GH +Y++ + DS L+S S D + VW+
Sbjct: 480 LEGHKESVYSIAFSPDSSILLSGSLDKTIKVWE 512
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 382 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
+ R GH IY++ + + R +VS S D +WD
Sbjct: 393 KVRYVFSGHEQDIYSLDFSHNGRFIVSGSGDRTARLWD 430
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 385 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
+ +T H + + W SD+R L S D ++ VW+
Sbjct: 238 SNQTNISHYGTVNGLAWTSDARYLASCGTDDRIRVWN 274
>SPBC17D11.08 |||WD repeat protein, human WDR68
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 27.1 bits (57), Expect = 2.7
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Frame = +1
Query: 310 RKAACDTS---LAQATSNLEPIGRIQMRTR----RTLRGHLAKIYAMHW--GSDSRNLVS 462
R +ACD+ +A N + I +R TLRGH + A+ W GS S+ L +
Sbjct: 275 RLSACDSDVNLMATFHHNSSDVQMIDIRVPGTAYATLRGHKGDVNAVKWMPGSKSK-LAT 333
Query: 463 ASQDGKLIVWD 495
D + +WD
Sbjct: 334 CGDDCVVSLWD 344
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1
Query: 397 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
L GH + ++ W ++S+S D +IVW+
Sbjct: 264 LMGHEDWVMSVDWHPTKEMILSSSADSSMIVWE 296
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 543 VMTCAYAPSGSYVACGGLD 599
V+ + PSGSY A GG+D
Sbjct: 53 VLVARFDPSGSYFASGGMD 71
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 397 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 498
L G I + W DSR + +S D L+ WD+
Sbjct: 89 LNGCKGAITDLQWSRDSRVVYCSSSDTHLMSWDA 122
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 391 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
R GHL+ +YA+ LV+A +D VWD
Sbjct: 241 RHYHGHLSGVYALKLHPTLDVLVTAGRDAVARVWD 275
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 540 WVMTCAYAPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSG*LS 686
W M+ ++P G+ + G + I Y++ + + VR S ++P SG +S
Sbjct: 399 WAMSACWSPDGNNIYIGRRNGIVEEYNIHSGKEPVR-SLKMPLDSGPVS 446
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = +1
Query: 316 AACDTSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLV 459
AACDT + A +E +G + ++ ++L+G +++A +G DS +V
Sbjct: 376 AACDTFRSGA---IEQLG-VHVKNLQSLKGSSIELFAQGYGKDSSFVV 419
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 442 DSRNLVSASQDGKLIVWDS 498
D+ L+S +DG ++VWDS
Sbjct: 307 DASLLISGDKDGNVLVWDS 325
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 439 SDSRNLVSASQDGKLIVWD 495
S R L+SAS DG++ +WD
Sbjct: 1189 SGMRELISASSDGEVKLWD 1207
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +1
Query: 403 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
GH + + ++ D+R +VS S+D + +W+
Sbjct: 103 GHTSDVLSVSISPDNRQVVSGSRDKTIKIWN 133
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 397 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 492
L GH + + + SD R L S S+D L +W
Sbjct: 190 LVGHEGACFDLKFSSDGRYLCSVSEDRTLRLW 221
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +1
Query: 397 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 498
L GH I A+ W D + + D ++ +W S
Sbjct: 100 LTGHKDSIVAIDWSFDGTYIATGGMDSQVRLWKS 133
>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
Vps32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 184 VRGARLSIVCST*AVCDACINHERLDSLRQEAETLKNAIR 303
+ G+R +I ++ +A +N E L ++RQ AE +K+ R
Sbjct: 77 IEGSRNNIEQQLFSIQNANLNFETLQAMRQGAEAMKSIQR 116
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/33 (30%), Positives = 14/33 (42%)
Frame = +1
Query: 397 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
++ H +I + W L S D L VWD
Sbjct: 245 MKVHEQEICGLQWDRSLGQLASGGNDNNLFVWD 277
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +1
Query: 391 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSH 501
+ ++ H ++ + + + V+AS DG L VW+ H
Sbjct: 158 KIVQAHEMEVRDVAFSPNDSKFVTASDDGSLKVWNFH 194
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +1
Query: 397 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 492
L H + + W + L+S Q+G L++W
Sbjct: 258 LHWHANPLNGLSWALNGEYLLSGGQEGVLVLW 289
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 394 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 498
TL GH+ ++ + +D L+S + DG + VW++
Sbjct: 469 TLFGHIEGVWEI--AADHLRLISGAHDGVVKVWEA 501
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 397 LRGHLAKIYAMHW-GSDSRNLVSASQDGKLIVWD 495
L GH ++ W D L+S+ +DG+ +VW+
Sbjct: 256 LTGHQKAALSLSWCPEDPTFLLSSGKDGRAMVWN 289
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 558 YAPSGSYVACGGLDNICSIYSLKTRE 635
Y+P+G+++A + I Y +TRE
Sbjct: 145 YSPNGNFLAVSSCNGILYFYDTQTRE 170
>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 366
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/89 (19%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Frame = +1
Query: 196 RLSIVCST*AVCDACINHERLDSLRQEAETLKNAIRDARKAACDTSLAQATSN---LEPI 366
+ +++ + AVCD+C + +R++ E ++ ++ + +++ S+ LE
Sbjct: 20 KATVLTKSDAVCDSCFVRRIENKIRRQFELVRPNLQGRKSKRAMLAISGGISSMAMLETA 79
Query: 367 GRIQMRTRRTLRGHLAKIYAMH--WGSDS 447
+ R ++ A+H WG+DS
Sbjct: 80 NYLSKYRDDNYRPMFDELLAVHFQWGTDS 108
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 394 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 495
TL GH + + + L+S S D LIVWD
Sbjct: 127 TLIGHTDYVKCLLLLEEEGLLLSGSTDASLIVWD 160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,805
Number of Sequences: 5004
Number of extensions: 52266
Number of successful extensions: 281
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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