Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1961
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    24   1.6  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    24   1.6  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    21   8.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   8.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.8  

>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 681 VSPSGRAVRGTRARCLRASSGYKSSRC 601
           + P+   +  TR RC R+  GY  + C
Sbjct: 96  LDPANEFIVSTRVRCGRSLEGYPFNPC 122


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 681 VSPSGRAVRGTRARCLRASSGYKSSRC 601
           + P+   +  TR RC R+  GY  + C
Sbjct: 112 LDPANEFIVSTRVRCGRSLEGYPFNPC 138


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 692 AAGQLARVAGQFAGHAHVAFARLQAINR 609
           +A QLAR+  +FA + ++   R Q ++R
Sbjct: 28  SAEQLARLKREFAENRYLTERRRQQLSR 55


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 566 GRVGAGHHPG*AQRDRVHLVVVWLSHTIS 480
           G +GAGH  G    D+  L+  W +  I+
Sbjct: 113 GVIGAGHWIGDHDVDKDELITGWSAVVIT 141



 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 617 INRADVVQSTASDVGARGRVGAGH 546
           I R D +   +  VGA G V AG+
Sbjct: 224 ILRLDAIDEASIAVGASGNVFAGY 247


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -2

Query: 180 QHATHRSFCQQCPFDRRSSDF 118
           +H      C+ CP   +SSD+
Sbjct: 271 KHEAGSHSCEACPAHSKSSDY 291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,591
Number of Sequences: 438
Number of extensions: 3351
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)