Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1959
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0442 + 3495333-3496484                                           30   2.4  
11_06_0562 + 25003246-25003746,25004975-25005214,25005576-250060...    29   5.6  
04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036     28   7.4  
01_01_0571 - 4233769-4234239,4234340-4234378,4234712-4234839,423...    28   7.4  
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034     28   9.7  

>12_01_0442 + 3495333-3496484
          Length = 383

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +3

Query: 75  VTRSKRYTGADRRKTARAC*RPPKRPSSAKTRVQTKLTRPR----CSQGSVKDTPKYSE 239
           VTR  R   A     A A   PP +P+S KT+ + K  +P+    C      +TP++ E
Sbjct: 203 VTRPPRTKQAPPTAPAPAPPPPPPQPASPKTKTKAKAKKPKRKRSCVHCGSTETPQWRE 261


>11_06_0562 +
           25003246-25003746,25004975-25005214,25005576-25006097,
           25006184-25007248,25007350-25007656,25007761-25008001,
           25008104-25008302,25008771-25008852,25008959-25009209,
           25010061-25010219,25010220-25010603
          Length = 1316

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 511 KTRIVFLNSTKRQCK*SPCTLHFIYEKKKMLHKNTLNYF*LRNIL 377
           K+ + F    K  CK   C + F YEK K+ H N    + L++I+
Sbjct: 413 KSMLNFSEMAKTDCK--MCDMSFDYEKIKLSHLNQQQLYSLKSII 455


>04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036
          Length = 762

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 19/73 (26%), Positives = 27/73 (36%)
 Frame = +3

Query: 69  PAVTRSKRYTGADRRKTARAC*RPPKRPSSAKTRVQTKLTRPRCSQGSVKDTPKYSEPNN 248
           P+  +S+    ADR+K+A     PP++   A    Q  +      Q  V   P   E   
Sbjct: 46  PSADKSQSPGSADRKKSASRITTPPEKQGKATKPAQESVAAKPSPQEPVAVKPSSQEQEQ 105

Query: 249 HQKAVIVQFSRVK 287
                 VQ   VK
Sbjct: 106 QALLAAVQQELVK 118


>01_01_0571 -
           4233769-4234239,4234340-4234378,4234712-4234839,
           4235329-4235470,4235519-4235905,4236045-4236230,
           4236382-4236659,4236757-4236883,4237270-4237442,
           4237610-4237657,4237734-4237767,4237837-4237965,
           4238865-4238960,4239419-4239485,4240030-4240085,
           4240522-4240617,4241127-4242222,4243221-4243402
          Length = 1244

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +3

Query: 135 RPPKRPSSAKTRVQTKLTRPRCSQGSVKDTPKYSEPNNHQKAVIVQFSRVKDLSGQCCVV 314
           RPP+ P+++   +  +L RP   Q   +D       +  Q+A+ V   + +  S +C   
Sbjct: 34  RPPRPPAASVAGIMERLVRPPRQQQQGRDQDASQARHVEQRALPV---KNQTTSNECSSA 90

Query: 315 LFCKS 329
           LF +S
Sbjct: 91  LFLES 95


>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
          Length = 930

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 219 DTPKYSEPNNHQKAVIVQFSRVKDLSGQCC 308
           D  + S PNNH  + I+  +R+ D++  CC
Sbjct: 286 DILRCSLPNNHLGSRIITTTRIVDVARSCC 315


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,888,790
Number of Sequences: 37544
Number of extensions: 396347
Number of successful extensions: 893
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)